Evaluating the performance of microbial genefinders is a difficult task, due mainly to the lack of experimentally verified genes in Genbank. A reasonable place to start is the Ecogene set of verified starts. These start sites have been experimentally determined via N-terminal sequencing. We included this set in its entirety, with the exception of those genes containing introns. This set also includes several nonstandard starts (ATA), but we kept those genes in to see if at least the 3' end would be detected.

Prodigal performs exceptionally well on this data set, locating all of the genes in the set, and getting about 96% of the starts correct. In reality, this number is even higher, since 2 of the starts are ATA, which no program will find. A detailed comparison of Prodigal's performance with other genefinding programs can be found in the forthcoming publication.

Performance on the Ecogene Verified Gene Set (884 genes, March, 2011)
Matching Genes (3') Matching Starts (5'+3') SN (3') SN (5'+3')
884853100.0%96.49%

In addition to doing detailed comparisons with a few key genomes, we also compared Prodigal's annotations with those in Genbank for every organism. In the following table, "Matching Genes" indicates that the same gene was predicted in both the Genbank annotations and with Prodigal (although not necessarily with the same start site). "Matching Starts" indicates the number of genes that are exactly the same between the two (both start and stop). "SN", or Sensitivity, is the number of correct genes divided by the number of genes in the Genbank file. "SP", or Specificity, is a measure of the false positive rate, and is the number of 'Matching Genes' divided by the number of genes predicted by Prodigal. "Accuracy" is defined as (SN+SP)/2.

In performing these comparisons, and looking at how other genefinding programs did with the same data, we discovered that Prodigal predicts consistently fewer genes (lower false positive rate) and gets substantially more starts correct. While other genefinding programs occasionally find 10-20 more genes in a genome than Prodigal, they do so at the cost of 50-100+ more false positives. The performance gap especially widens in high GC genomes, such as Anaeromyxobacter dehalogenans 2CP-C or Pseudomonas aeruginosa PAO1, where Prodigal's start site predictions often exceed those of other programs by as much as 5-10%. It should be noted that Genbank files in general contain many mistakes, and are not the most reliable source of comparison; however, when one implements a change and it results in an improvement across a large number of Genbank files, this can be seen as a likely improvement to the algorithm.

Given Prodigal's consistent performance across all types of genomes, we have come to the conclusion that comparison to Genbank files is often more useful in measuring the accuracy of the Genbank annotations than of Prodigal. Those genomes with a total accuracy (3') of less than 93% or so, and especially those with a total accuracy (5'+3') of less than 85%, could likely benefit from simply substituting the current annotations with the Prodigal predictions. Exceptions to this rule include cyanobacteria, chlorobi, and some archaea, where Prodigal performs worse than usual in start prediction.


Prodigal Comparisons with Genbank Annotations (March, 2011)
Genome King Group GC% Genbank Genes Prodigal Genes Matching Genes Matching Starts SN (3') SN (5'+3') SP Total Accuracy (3') Total Accuracy (5'+3')
'Nostoc azollae' 0708BCyanobacteria38.3365165693506332996.03%91.18%53.37%74.70%72.28%
Acaryochloris marina MBIC11017BCyanobacteria47.0838077687341599387.60%71.52%94.50%91.05%83.01%
Acetobacter pasteurianus IFO 3283-01BAlphaproteobacteria53.1305031562962235497.11%77.18%93.85%95.48%85.52%
Acetobacter pasteurianus IFO 3283-01-42CBAlphaproteobacteria53.1298430792900230397.18%77.18%94.19%95.69%85.68%
Acetobacter pasteurianus IFO 3283-03BAlphaproteobacteria53.1304831562958235397.05%77.20%93.73%95.39%85.46%
Acetobacter pasteurianus IFO 3283-07BAlphaproteobacteria53.1304731532960235197.14%77.16%93.88%95.51%85.52%
Acetobacter pasteurianus IFO 3283-12BAlphaproteobacteria53.1304631522960235497.18%77.28%93.91%95.54%85.60%
Acetobacter pasteurianus IFO 3283-22BAlphaproteobacteria53.1304831552960235397.11%77.20%93.82%95.47%85.51%
Acetobacter pasteurianus IFO 3283-26BAlphaproteobacteria53.1304831552960235297.11%77.17%93.82%95.47%85.49%
Acetobacter pasteurianus IFO 3283-32BAlphaproteobacteria53.1304631532960235497.18%77.28%93.88%95.53%85.58%
Acetohalobium arabaticum DSM 5501BFirmicutes228123532276222999.78%97.72%96.73%98.25%97.22%
Acholeplasma laidlawii PG-8ABFirmicutes31.9138013891363120498.77%87.25%98.13%98.45%92.69%
Achromobacter xylosoxidans A8BBetaproteobacteria681567546731620198.77%90.99%99.66%99.21%95.32%
Acidaminococcus fermentans DSM 20731BFirmicutes55.8202620632005194998.96%96.20%97.19%98.08%96.69%
Acidilobus saccharovorans 345-15ACrenarchaeota54.5149915021471104198.13%69.45%97.94%98.03%83.69%
Acidimicrobium ferrooxidans DSM 10331BActinobacteria68.3196420561957186999.64%95.16%95.18%97.41%95.17%
Acidiphilium cryptum JF-5BAlphaproteobacteria67.1356136483428291196.27%81.75%93.97%95.12%87.86%
Acidithiobacillus ferrooxidans ATCC 23270BGammaproteobacteria58.8314630522802221989.07%70.53%91.81%90.44%81.17%
Acidithiobacillus ferrooxidans ATCC 53993BOther Bacteria58.9282629132796268798.94%95.08%95.98%97.46%95.53%
Acidobacterium capsulatum ATCC 51196BAcidobacteria60.5338133703127232792.49%68.83%92.79%92.64%80.81%
Acidobacterium sp. MP5ACTX9BAcidobacteria454147144518442599.49%97.45%95.84%97.67%96.64%
Acidothermus cellulolyticus 11BBActinobacteria66.9215722002124174598.47%80.90%96.55%97.51%88.72%
Acidovorax avenae subsp. avenae ATCC 19860BBetaproteobacteria68.9472947884720464299.81%98.16%98.58%99.19%98.37%
Acidovorax citrulli AAC00-1BBetaproteobacteria68.5471048854609393797.86%83.59%94.35%96.10%88.97%
Acidovorax ebreus TPSYBBetaproteobacteria66.8347835263455323599.34%93.01%97.99%98.66%95.50%
Acidovorax sp. JS42BBetaproteobacteria66.114815614012994.59%87.16%89.74%92.17%88.45%
Aciduliprofundum boonei T469AEuryarchaeota39.2154415581539150299.68%97.28%98.78%99.23%98.03%
Acinetobacter baumannii 1656-2BGammaproteobacteria382438373753289998.14%75.81%97.81%97.98%86.81%
Acinetobacter baumannii AB0057BGammaproteobacteria39.2380138813729334998.11%88.11%96.08%97.09%92.10%
Acinetobacter baumannii AB307-0294BGammaproteobacteria39.0345834673386301597.92%87.19%97.66%97.79%92.43%
Acinetobacter baumannii ACICUBGammaproteobacteria38.9375937823709335798.67%89.31%98.07%98.37%93.69%
Acinetobacter baumannii ATCC 17978BGammaproteobacteria38.9380339513660310596.24%81.65%92.63%94.44%87.14%
Acinetobacter baumannii AYEBGammaproteobacteria39.3378937953723292198.26%77.09%98.10%98.18%87.60%
Acinetobacter baumannii SDFBGammaproteobacteria39.1357735473488277097.51%77.44%98.34%97.92%87.89%
Acinetobacter baumannii TCDC-AB0715BGammaproteobacteria394940543918308599.21%78.12%96.65%97.93%87.38%
Acinetobacter sp. ADP1BGammaproteobacteria40.4331132733222240997.31%72.76%98.44%97.88%85.60%
Acinetobacter sp. DR1BGammaproteobacteria387438523815353898.48%91.33%99.04%98.76%95.18%
Actinobacillus pleuropneumoniae serovar 3 str. JL03BGammaproteobacteria41.2203720772003180498.33%88.56%96.44%97.38%92.50%
Actinobacillus pleuropneumoniae serovar 5b str. L20BGammaproteobacteria41.3201221312007184999.75%91.90%94.18%96.97%93.04%
Actinobacillus pleuropneumoniae serovar 7 str. AP76BGammaproteobacteria41.2214222032128198199.35%92.48%96.60%97.97%94.54%
Actinobacillus succinogenes 130ZBGammaproteobacteria44.9207921382070196599.57%94.52%96.82%98.19%95.67%
Actinosynnema mirum DSM 43827BActinobacteria73.7691470646883647599.55%93.65%97.44%98.49%95.54%
Aeromonas hydrophila subsp. hydrophila ATCC 7966BGammaproteobacteria61.5412341884068324498.67%78.68%97.13%97.90%87.91%
Aeromonas salmonicida subsp. salmonicida A449BGammaproteobacteria58.2443147834289353096.80%79.67%89.67%93.23%84.67%
Aeropyrum pernix K1ACrenarchaeota56.3169917201672142698.41%83.93%97.21%97.81%90.57%
Aggregatibacter actinomycetemcomitans D11S-1BGammaproteobacteria44.3228521572089189791.42%83.02%96.85%94.13%89.93%
Aggregatibacter aphrophilus NJ8700BGammaproteobacteria42.2223222002071190892.79%85.48%94.14%93.46%89.81%
Agrobacterium radiobacter K84BAlphaproteobacteria59.9668568356474520696.84%77.88%94.72%95.78%86.30%
Agrobacterium sp. H13-3BAlphaproteobacteria534652325097443895.34%83.02%97.42%96.38%90.22%
Agrobacterium tumefaciens str. C58BAlphaproteobacteria59.0535652885079421594.83%78.70%96.05%95.44%87.37%
Agrobacterium vitis S4BAlphaproteobacteria57.5539257855288420098.07%77.89%91.41%94.74%84.65%
Akkermansia muciniphila ATCC BAA-835BOther Bacteria55.8213821902123188999.30%88.35%96.94%98.12%92.65%
Alcanivorax borkumensis SK2BGammaproteobacteria54.7275528202724222198.87%80.62%96.60%97.74%88.61%
Alicycliphilus denitrificans BCBBetaproteobacteria454146014505439799.21%96.83%97.91%98.56%97.37%
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446BFirmicutes61.9308331523056293099.12%95.04%96.95%98.04%96.00%
Aliivibrio salmonicida LFI1238BGammaproteobacteria39.0407844883942346196.67%84.87%87.83%92.25%86.35%
Alistipes shahii WAL 8301BBacteroidetes/Chlorobi255831322452197595.86%77.21%78.29%87.07%77.75%
Alkalilimnicola ehrlichii MLHE-1BGammaproteobacteria67.5286529012843256999.23%89.67%98.00%98.62%93.83%
Alkaliphilus metalliredigens QYMFBFirmicutes36.8461948234512407797.68%88.27%93.55%95.62%90.91%
Alkaliphilus oremlandii OhILAsBFirmicutes36.3283629802821260899.47%91.96%94.66%97.07%93.31%
Allochromatium vinosum DSM 180BGammaproteobacteria64.2321632623188310599.13%96.55%97.73%98.43%97.14%
Alteromonas macleodii 'Deep ecotype'BGammaproteobacteria44.9407439803809305693.50%75.01%95.70%94.60%85.36%
Aminobacterium colombiense DSM 12261BOther Bacteria45.3187519141864178799.41%95.31%97.39%98.40%96.35%
Ammonifex degensii KC4BFirmicutes59.5207822152066196599.42%94.56%93.27%96.35%93.92%
Amycolatopsis mediterranei U32BActinobacteria922895129182749399.50%81.20%96.53%98.02%88.86%
Anabaena variabilis ATCC 29413BCyanobacteria41.4570659285644518498.91%90.85%95.21%97.06%93.03%
Anaerococcus prevotii DSM 20548BFirmicutes35.6180518301794176599.39%97.78%98.03%98.71%97.91%
Anaerolinea thermophila UNI-1BChloroflexi317731863109269197.86%84.70%97.58%97.72%91.14%
Anaeromyxobacter dehalogenans 2CP-1BDeltaproteobacteria74.7447445204464435399.78%97.30%98.76%99.27%98.03%
Anaeromyxobacter dehalogenans 2CP-CBDeltaproteobacteria74.9434644714274370998.34%85.34%95.59%96.97%90.47%
Anaeromyxobacter sp. Fw109-5BDeltaproteobacteria73.5446846024379374398.01%83.77%95.15%96.58%89.46%
Anaeromyxobacter sp. KBDeltaproteobacteria74.844563843823668.57%8.21%99.48%54.03%53.85%
Anaplasma centrale str. IsraelBAlphaproteobacteria50.0925102590966398.27%71.68%88.68%93.48%80.18%
Anaplasma marginale str. FloridaBAlphaproteobacteria49.8942102392452198.09%55.31%90.32%94.21%72.82%
Anaplasma marginale str. St. MariesBAlphaproteobacteria49.8949101892356597.26%59.54%90.67%93.96%75.10%
Anaplasma phagocytophilum HZBAlphaproteobacteria41.61264125698971778.24%56.72%78.74%78.49%67.73%
Aquifex aeolicus VF5BAquificae43.3155417751542135499.23%87.13%86.87%93.05%87.00%
Arcanobacterium haemolyticum DSM 20595BActinobacteria173218521723168499.48%97.23%93.03%96.26%95.13%
Archaeoglobus fulgidus DSM 4304AEuryarchaeota48.6240725182368181298.38%75.28%94.04%96.21%84.66%
Archaeoglobus profundus DSM 5631AEuryarchaeota42.0182218731811172699.40%94.73%96.69%98.04%95.71%
Arcobacter butzleri RM4018BEpsilonproteobacteria27.0225922852249211799.56%93.71%98.42%98.99%96.07%
Arcobacter nitrofigilis DSM 7299BEpsilonproteobacteria312680679678825.46%25.21%98.76%62.11%61.98%
Aromatoleum aromaticum EbN1BBetaproteobacteria64.7456645124033336588.33%73.70%89.38%88.86%81.54%
Arthrobacter arilaitensis Re117BActinobacteria343937353363286197.79%83.19%90.04%93.92%86.62%
Arthrobacter aurescens TC1BActinobacteria62.454659650735692.86%65.20%85.07%88.96%75.13%
Arthrobacter chlorophenolicus A6BActinobacteria66.0458946464568431999.54%94.12%98.32%98.93%96.22%
Arthrobacter phenanthrenivorans Sphe3BActinobacteria65.7413142464092340299.06%82.35%96.37%97.71%89.36%
Arthrobacter sp. FB24BActinobacteria65.4450646234465373499.09%82.87%96.58%97.84%89.72%
Arthrospira platensis NIES-39BCyanobacteria662462575797481687.52%72.71%92.65%90.08%82.68%
Aster yellows witches'-broom phytoplasma AYWBBFirmicutes26.869368964054492.35%78.50%92.89%92.62%85.69%
Asticcacaulis excentricus CB 48BAlphaproteobacteria59.5376138373743369799.52%98.30%97.55%98.54%97.92%
Atopobium parvulum DSM 20469BActinobacteria45.7135313631348131099.63%96.82%98.90%99.26%97.86%
Azoarcus sp. BH72BBetaproteobacteria67.9399139743943358398.80%89.78%99.22%99.01%94.50%
Azorhizobium caulinodans ORS 571BAlphaproteobacteria67.3471748104673316699.07%67.12%97.15%98.11%82.14%
Azospirillum sp. B510BAlphaproteobacteria67.6579060645695421898.36%72.85%93.91%96.14%83.38%
Azotobacter vinelandii DJBGammaproteobacteria65.7505348214619383491.41%75.88%95.81%93.61%85.84%
Bacillus amyloliquefaciens DSM 7BFirmicutes392340393849350498.11%89.32%95.30%96.70%92.31%
Bacillus amyloliquefaciens FZB42BFirmicutes46.5369437413616328797.89%88.98%96.66%97.27%92.82%
Bacillus anthracis str. 'Ames Ancestor'BFirmicutes35.227630022518981.52%68.48%75.00%78.26%71.74%
Bacillus anthracis str. A0248BFirmicutes35.225129721619886.06%78.88%72.73%79.39%75.81%
Bacillus anthracis str. AmesBFirmicutes35.4532754745111451995.95%84.83%93.37%94.66%89.10%
Bacillus anthracis str. CDC 684BFirmicutes35.2589557675643513295.73%87.06%97.85%96.79%92.45%
Bacillus anthracis str. SterneBFirmicutes35.4528654715208448498.52%84.83%95.19%96.86%90.01%
Bacillus atrophaeus 1942BFirmicutes418541094014373095.91%89.13%97.69%96.80%93.41%
Bacillus cellulosilyticus DSM 2522BFirmicutes36.3426543274253421299.72%98.76%98.29%99.00%98.52%
Bacillus cereus 03BB102BFirmicutes35.3560555025383497396.04%88.72%97.84%96.94%93.28%
Bacillus cereus AH187BFirmicutes35.5578456605530511595.61%88.43%97.70%96.66%93.07%
Bacillus cereus AH820BFirmicutes35.3580956775562512095.75%88.14%97.97%96.86%93.06%
Bacillus cereus ATCC 10987BFirmicutes35.5584054945352468391.64%80.19%97.42%94.53%88.80%
Bacillus cereus ATCC 14579BFirmicutes35.3525555415121419197.45%79.75%92.42%94.94%86.09%
Bacillus cereus B4264BFirmicutes35.3540053495244484697.11%89.74%98.04%97.57%93.89%
Bacillus cereus E33LBFirmicutes35.1563758615527471098.05%83.56%94.30%96.17%88.93%
Bacillus cereus G9842BFirmicutes35.0585657345637520396.26%88.85%98.31%97.28%93.58%
Bacillus cereus Q1BFirmicutes35.5550255355345453197.15%82.35%96.57%96.86%89.46%
Bacillus cereus biovar anthracis str. CIBFirmicutes555856005402493797.19%88.83%96.46%96.83%92.65%
Bacillus clausii KSM-K16BFirmicutes44.8410843044080358699.32%87.29%94.80%97.06%91.04%
Bacillus cytotoxicus NVH 391-98BFirmicutes35.9384441013779347698.31%90.43%92.15%95.23%91.29%
Bacillus halodurans C-125BFirmicutes43.7406640823983362397.96%89.10%97.57%97.77%93.34%
Bacillus licheniformis ATCC 14580BFirmicutes46.2417942954088374097.82%89.50%95.18%96.50%92.34%
Bacillus licheniformis ATCC 14580BFirmicutes46.2419642904113372198.02%88.68%95.87%96.95%92.28%
Bacillus megaterium DSM 319BFirmicutes38.1512451924996460597.50%89.87%96.22%96.86%93.05%
Bacillus megaterium QM B1551BFirmicutes37.9562955985395492695.84%87.51%96.37%96.11%91.94%
Bacillus pseudofirmus OF4BFirmicutes39.9433542614199390896.86%90.15%98.54%97.70%94.35%
Bacillus pumilus SAFR-032BFirmicutes41.3368136953555313196.58%85.06%96.21%96.39%90.63%
Bacillus selenitireducens MLS10BFirmicutes48.6325333613224307899.11%94.62%95.92%97.52%95.27%
Bacillus subtilis BSn5BFirmicutes414440553992369596.33%89.17%98.45%97.39%93.81%
Bacillus subtilis subsp. natto BEST195BFirmicutes438541694042362492.18%82.65%96.95%94.57%89.80%
Bacillus subtilis subsp. spizizenii str. W23BFirmicutes406439903925360496.58%88.68%98.37%97.48%93.53%
Bacillus subtilis subsp. subtilis str. 168BFirmicutes43.5424242264129371597.34%87.58%97.70%97.52%92.64%
Bacillus thuringiensis BMB171BFirmicutes534956155142443196.13%82.84%91.58%93.85%87.21%
Bacillus thuringiensis serovar finitimus YBT-020BFirmicutes578057195618528397.20%91.40%98.23%97.72%94.82%
Bacillus thuringiensis serovar konkukian str. 97-27BFirmicutes35.4519753615121441598.54%84.95%95.52%97.03%90.24%
Bacillus thuringiensis str. Al HakamBFirmicutes35.4479853634751307699.02%64.11%88.59%93.80%76.35%
Bacillus tusciae DSM 2912BFirmicutes314433263137301599.78%95.90%94.32%97.05%95.11%
Bacillus weihenstephanensis KBAB4BFirmicutes35.5565358235556514798.28%91.05%95.41%96.85%93.23%
Bacteriovorax marinus SJBDeltaproteobacteria324332783216260399.17%80.27%98.11%98.64%89.19%
Bacteroides fragilis 638RBBacteroidetes/Chlorobi429444334151352496.67%82.07%93.64%95.15%87.85%
Bacteroides fragilis NCTC 9343BBacteroidetes/Chlorobi43.1427743524060340694.93%79.64%93.29%94.11%86.46%
Bacteroides fragilis YCH46BBacteroidetes/Chlorobi43.2462644164226365891.35%79.07%95.70%93.53%87.39%
Bacteroides helcogenes P 36-108BBacteroidetes/Chlorobi44.7324533593237313799.75%96.67%96.37%98.06%96.52%
Bacteroides salanitronis DSM 18170BBacteroidetes/Chlorobi364337823628353699.59%97.06%95.93%97.76%96.50%
Bacteroides thetaiotaomicron VPI-5482BBacteroidetes/Chlorobi42.9482849444681397896.96%82.39%94.68%95.82%88.54%
Bacteroides vulgatus ATCC 8482BBacteroidetes/Chlorobi42.2406642183906341496.06%83.96%92.60%94.33%88.28%
Bacteroides xylanisolvens XB1ABBacteroidetes/Chlorobi441048444245338996.26%76.85%87.63%91.95%82.24%
Bartonella bacilliformis KC583BAlphaproteobacteria38.2128212351166103790.95%80.89%94.41%92.68%87.65%
Bartonella clarridgeiae 73BAlphaproteobacteria138712491232105188.82%75.78%98.64%93.73%87.21%
Bartonella grahamii as4aupBAlphaproteobacteria38.0176819971742154298.53%87.22%87.23%92.88%87.22%
Bartonella henselae str. Houston-1BAlphaproteobacteria38.2161316341430126088.65%78.12%87.52%88.08%82.82%
Bartonella quintana str. ToulouseBAlphaproteobacteria38.813081316112099385.63%75.92%85.11%85.37%80.51%
Bartonella tribocorum CIP 105476BAlphaproteobacteria38.8215623092083189296.61%87.76%90.21%93.41%88.98%
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BGammaproteobacteria33.259560759053899.16%90.42%97.20%98.18%93.81%
Beijerinckia indica subsp. indica ATCC 9039BAlphaproteobacteria57.0377240203740351599.15%93.19%93.03%96.09%93.11%
Beutenbergia cavernae DSM 12333BActinobacteria73.1419742174190402399.83%95.85%99.36%99.60%97.61%
Bifidobacterium adolescentis ATCC 15703BActinobacteria59.2163116821521101693.26%62.29%90.43%91.84%76.36%
Bifidobacterium animalis subsp. lactis AD011BActinobacteria60.5152815821495112697.84%73.69%94.50%96.17%84.10%
Bifidobacterium animalis subsp. lactis BB-12BActinobacteria60.516421573148276090.26%46.29%94.21%92.24%70.25%
Bifidobacterium animalis subsp. lactis Bl-04BActinobacteria60.5156715681527124397.45%79.32%97.39%97.42%88.35%
Bifidobacterium animalis subsp. lactis DSM 10140BActinobacteria60.5156615711521124197.13%79.25%96.82%96.97%88.03%
Bifidobacterium animalis subsp. lactis V9BActinobacteria157215681530124497.33%79.13%97.58%97.45%88.36%
Bifidobacterium bifidum PRL2010BActinobacteria170718291690139099.00%81.43%92.40%95.70%86.91%
Bifidobacterium bifidum S17BActinobacteria178417871778164299.66%92.04%99.50%99.58%95.77%
Bifidobacterium dentium Bd1BActinobacteria58.5213021482071144497.23%67.79%96.42%96.82%82.10%
Bifidobacterium longum DJO10ABActinobacteria60.2200119751927162096.30%80.96%97.57%96.94%89.26%
Bifidobacterium longum NCC2705BActinobacteria60.1172918331618119693.58%69.17%88.27%90.93%78.72%
Bifidobacterium longum subsp. infantis 157FBActinobacteria199920071911156295.60%78.14%95.22%95.41%86.68%
Bifidobacterium longum subsp. infantis ATCC 15697BActinobacteria59.9241625632342193196.94%79.93%91.38%94.16%85.65%
Bifidobacterium longum subsp. longum BBMN68BActinobacteria180618311743149996.51%83.00%95.19%95.85%89.10%
Bifidobacterium longum subsp. longum F8BActinobacteria168219521606127995.48%76.04%82.27%88.88%79.16%
Bifidobacterium longum subsp. longum JCM 1217BActinobacteria192419521861151396.73%78.64%95.34%96.03%86.99%
Bifidobacterium longum subsp. longum JDM301BActinobacteria195920241896155296.78%79.22%93.68%95.23%86.45%
Blattabacterium sp. (Blattella germanica) str. BgeBBacteroidetes/Chlorobi27.158758958352099.32%88.59%98.98%99.15%93.78%
Blattabacterium sp. (Periplaneta americana) str. BPLANBBacteroidetes/Chlorobi28.258260258052699.66%90.38%96.35%98.00%93.36%
Bordetella avium 197NBBetaproteobacteria61.6304134092965264297.50%86.88%86.98%92.24%86.93%
Bordetella petrii DSM 12804BBetaproteobacteria65.5503550734949426598.29%84.71%97.56%97.92%91.13%
Borrelia afzelii PKoBSpirochaetes27.7126111721157106691.75%84.54%98.72%95.24%91.63%
Borrelia burgdorferi B31BSpirochaetes28.2163915101437115787.68%70.59%95.17%91.42%82.88%
Borrelia burgdorferi JD1BSpirochaetes28.2145215231424129798.07%89.33%93.50%95.79%91.41%
Borrelia burgdorferi N40BSpirochaetes28.1123913111223110698.71%89.27%93.29%96.00%91.28%
Borrelia burgdorferi ZS7BSpirochaetes28.3123913281193111896.29%90.23%89.83%93.06%90.03%
Borrelia duttonii LyBSpirochaetes28.0130015681297100999.77%77.62%82.72%91.24%80.17%
Borrelia garinii PBiBSpirochaetes28.193292290282796.78%88.73%97.83%97.31%93.28%
Borrelia hermsii DAHBSpirochaetes29.8868100586569499.65%79.95%86.07%92.86%83.01%
Borrelia recurrentis A1BSpirochaetes27.5990121498576799.49%77.47%81.14%90.32%79.31%
Borrelia turicatae 91E135BSpirochaetes29.181883281462899.51%76.77%97.84%98.67%87.30%
Brachybacterium faecium DSM 4810BActinobacteria72.0306331223052289599.64%94.52%97.76%98.70%96.14%
Brachyspira hyodysenteriae WA1BSpirochaetes27.0264526202598213698.22%80.76%99.16%98.69%89.96%
Brachyspira murdochii DSM 12563BSpirochaetes27.8280828682805278799.89%99.25%97.80%98.85%98.53%
Brachyspira pilosicoli 95/1000BSpirochaetes230322822269189598.52%82.28%99.43%98.98%90.86%
Bradyrhizobium japonicum USDA 110BAlphaproteobacteria64.1831984987769527593.39%63.41%91.42%92.41%77.42%
Bradyrhizobium sp. BTAi1BAlphaproteobacteria64.8762476717380571796.80%74.99%96.21%96.50%85.60%
Bradyrhizobium sp. ORS278BAlphaproteobacteria65.5675466756548483496.95%71.57%98.10%97.52%84.83%
Brevibacillus brevis NBRC 100599BFirmicutes47.3595059175665485095.21%81.51%95.74%95.48%88.63%
Brevundimonas subvibrioides ATCC 15264BAlphaproteobacteria68.4332633323320327399.82%98.41%99.64%99.73%99.02%
Brucella abortus S19BAlphaproteobacteria57.2300131292860242795.30%80.87%91.40%93.35%86.14%
Brucella abortus bv. 1 str. 9-941BAlphaproteobacteria57.2307431282743232289.23%75.54%87.69%88.46%81.61%
Brucella canis ATCC 23365BAlphaproteobacteria57.2325131082871246488.31%75.79%92.37%90.34%84.08%
Brucella melitensis ATCC 23457BAlphaproteobacteria57.2313631522818240789.86%76.75%89.40%89.63%83.08%
Brucella melitensis biovar Abortus 2308BAlphaproteobacteria57.2335131213005245589.67%73.26%96.28%92.98%84.77%
Brucella melitensis bv. 1 str. 16MBAlphaproteobacteria57.2319931532995171393.62%53.55%94.99%94.31%74.27%
Brucella microti CCM 4915BAlphaproteobacteria57.3328630922925238989.01%72.70%94.60%91.81%83.65%
Brucella ovis ATCC 25840BAlphaproteobacteria57.2289132222689204793.01%70.81%83.46%88.24%77.13%
Brucella suis 1330BAlphaproteobacteria57.3327331032852236287.14%72.17%91.91%89.52%82.04%
Brucella suis ATCC 23445BAlphaproteobacteria57.2324031572866247188.46%76.27%90.78%89.62%83.52%
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BGammaproteobacteria26.355458055351099.82%92.06%95.34%97.58%93.70%
Buchnera aphidicola str. APS (Acyrthosiphon pisum)BGammaproteobacteria26.457459457351299.83%89.20%96.46%98.15%92.83%
Buchnera aphidicola str. Bp (Baizongia pistaciae)BGammaproteobacteria25.3507525507464100.00%91.52%96.57%98.29%94.05%
Buchnera aphidicola str. Cc (Cinara cedri)BGammaproteobacteria20.236137435934299.45%94.74%95.99%97.72%95.36%
Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)BGammaproteobacteria47773744141192.45%86.16%59.84%76.15%73.00%
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)BGammaproteobacteria59059456552395.76%88.64%95.12%95.44%91.88%
Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)BGammaproteobacteria57760655251995.67%89.95%91.09%93.38%90.52%
Buchnera aphidicola str. Sg (Schizaphis graminum)BGammaproteobacteria25.354560054351499.63%94.31%90.50%95.07%92.41%
Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)BGammaproteobacteria57361254550495.11%87.96%89.05%92.08%88.51%
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BGammaproteobacteria26.355258055150699.82%91.67%95.00%97.41%93.33%
Burkholderia ambifaria AMMDBBetaproteobacteria66.8661366086439557697.37%84.32%97.44%97.41%90.88%
Burkholderia ambifaria MC40-6BBetaproteobacteria66.4669867546618634298.81%94.68%97.99%98.40%96.34%
Burkholderia cenocepacia AU 1054BBetaproteobacteria66.9647965156294531497.14%82.02%96.61%96.88%89.31%
Burkholderia cenocepacia HI2424BBetaproteobacteria66.8692168936703579696.85%83.75%97.24%97.05%90.49%
Burkholderia cenocepacia J2315BBetaproteobacteria66.9717273077042601698.19%83.88%96.37%97.28%90.13%
Burkholderia cenocepacia MC0-3BBetaproteobacteria66.6701071186942645299.03%92.04%97.53%98.28%94.78%
Burkholderia glumae BGR1BBetaproteobacteria67.9577364215648496297.83%85.95%87.96%92.90%86.96%
Burkholderia mallei ATCC 23344BBetaproteobacteria68.5502550024389339187.34%67.48%87.74%87.54%77.61%
Burkholderia mallei NCTC 10229BBetaproteobacteria68.5515749164451341786.31%66.26%90.54%88.43%78.40%
Burkholderia mallei NCTC 10247BBetaproteobacteria68.5541350164511351583.34%64.94%89.93%86.63%77.43%
Burkholderia mallei SAVP1BBetaproteobacteria68.4518944964332331283.48%63.83%96.35%89.92%80.09%
Burkholderia multivorans ATCC 17616BBetaproteobacteria66.7626063706112527397.64%84.23%95.95%96.79%90.09%
Burkholderia multivorans ATCC 17616BBetaproteobacteria66.7622863756106545498.04%87.57%95.78%96.91%91.68%
Burkholderia phymatum STM815BBetaproteobacteria62.3446047334277381595.90%85.54%90.37%93.13%87.95%
Burkholderia phytofirmans PsJNBBetaproteobacteria62.3723573417155682398.89%94.31%97.47%98.18%95.89%
Burkholderia pseudomallei 1106aBBetaproteobacteria68.3718157595562436177.45%60.73%96.58%87.02%78.65%
Burkholderia pseudomallei 1710bBBetaproteobacteria68.0634859795433367585.59%57.89%90.87%88.23%74.38%
Burkholderia pseudomallei 668BBetaproteobacteria68.3711757955599442878.67%62.22%96.62%87.64%79.42%
Burkholderia pseudomallei K96243BBetaproteobacteria68.1585759485615439295.87%74.99%94.40%95.13%84.69%
Burkholderia rhizoxinica HKI 454BBetaproteobacteria366931622922158679.64%43.23%92.41%86.03%67.82%
Burkholderia sp. 383BBetaproteobacteria66.3772077137502648297.18%83.96%97.26%97.22%90.61%
Burkholderia sp. CCGE1001BBetaproteobacteria63.7595960185935585099.60%98.17%98.62%99.11%98.40%
Burkholderia sp. CCGE1002BBetaproteobacteria63.3688871706854672999.51%97.69%95.59%97.55%96.64%
Burkholderia sp. CCGE1003BBetaproteobacteria63.3598760805970586599.72%97.96%98.19%98.95%98.08%
Burkholderia thailandensis E264BBetaproteobacteria67.6563256535404384995.95%68.34%95.60%95.77%81.97%
Burkholderia vietnamiensis G4BBetaproteobacteria65.7760777127243621595.21%81.70%93.92%94.57%87.81%
Burkholderia xenovorans LB400BBetaproteobacteria62.6870387048209703294.32%80.80%94.31%94.32%87.56%
Butyrivibrio fibrisolvensBFirmicutes290433282784260695.87%89.74%83.65%89.76%86.70%
Butyrivibrio proteoclasticus B316BFirmicutes28381138703757323898.58%84.96%97.08%97.83%91.02%
Caldicellulosiruptor bescii DSM 6725BFirmicutes35.2266528072640254399.06%95.42%94.05%96.56%94.74%
Caldicellulosiruptor hydrothermalis 108BFirmicutes36.4254626402542252199.84%99.02%96.29%98.07%97.65%
Caldicellulosiruptor kristjanssonii 177R1BBFirmicutes248126912476243999.80%98.31%92.01%95.90%95.16%
Caldicellulosiruptor kronotskyensis 2002BFirmicutes246526012462243599.88%98.78%94.66%97.27%96.72%
Caldicellulosiruptor obsidiansis OB47BFirmicutes2187237821872152100.00%98.40%91.97%95.98%95.18%
Caldicellulosiruptor owensensis OLBFirmicutes36.6214623052144210799.91%98.18%93.02%96.46%95.60%
Caldicellulosiruptor saccharolyticus DSM 8903BOther Bacteria35.3267928722662240299.37%89.66%92.69%96.03%91.17%
Calditerrivibrio nitroreducens DSM 19672BOther Bacteria210021292092206599.62%98.33%98.26%98.94%98.30%
Caldivirga maquilingensis IC-167ACrenarchaeota43.1196320771952167199.44%85.12%93.98%96.71%89.55%
Campylobacter concisus 13826BEpsilonproteobacteria39.3208020731975185694.95%89.23%95.27%95.11%92.25%
Campylobacter curvus 525.92BEpsilonproteobacteria44.5193119471799164893.16%85.34%92.40%92.78%88.87%
Campylobacter fetus subsp. fetus 82-40BEpsilonproteobacteria33.3171917411681155597.79%90.46%96.55%97.17%93.51%
Campylobacter hominis ATCC BAA-381BEpsilonproteobacteria31.7168716371548145791.76%86.37%94.56%93.16%90.46%
Campylobacter jejuni RM1221BEpsilonproteobacteria30.3183918771770165196.25%89.78%94.30%95.27%92.04%
Campylobacter jejuni subsp. doylei 269.97BEpsilonproteobacteria30.6173219821677155296.82%89.61%84.61%90.72%87.11%
Campylobacter jejuni subsp. jejuni 81-176BEpsilonproteobacteria30.5175917261708155697.10%88.46%98.96%98.03%93.71%
Campylobacter jejuni subsp. jejuni 81116BEpsilonproteobacteria30.5162716171612154099.08%94.65%99.69%99.38%97.17%
Campylobacter jejuni subsp. jejuni IA3902BEpsilonproteobacteria30.5166717031645156198.68%93.64%96.59%97.64%95.12%
Campylobacter jejuni subsp. jejuni ICDCCJ07001BEpsilonproteobacteria153118551527142799.74%93.21%82.32%91.03%87.76%
Campylobacter jejuni subsp. jejuni M1BEpsilonproteobacteria162316381615151399.51%93.22%98.60%99.05%95.91%
Campylobacter jejuni subsp. jejuni NCTC 11168BEpsilonproteobacteria30.5166716581594148095.62%88.78%96.14%95.88%92.46%
Campylobacter jejuni subsp. jejuni S3BEpsilonproteobacteria181318151768164997.52%90.95%97.41%97.46%94.18%
Campylobacter lari RM2100BEpsilonproteobacteria29.6154415801538147299.61%95.34%97.34%98.48%96.34%
Candidatus Accumulibacter phosphatis clade IIA str. UW-1BBetaproteobacteria64.0456347154512432498.88%94.76%95.69%97.29%95.23%
Candidatus Amoebophilus asiaticus 5a2BBacteroidetes/Chlorobi35.0133515371285109196.25%81.72%83.60%89.93%82.66%
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2BBacteroidetes/Chlorobi32.9853108984473598.94%86.17%77.50%88.22%81.83%
Candidatus Blochmannia floridanusBGammaproteobacteria27.458960358452299.15%88.62%96.85%98.00%92.74%
Candidatus Blochmannia pennsylvanicus str. BPENBGammaproteobacteria29.660662160255099.34%90.76%96.94%98.14%93.85%
Candidatus Blochmannia vafer str. BVAFBGammaproteobacteria58059757651899.31%89.31%96.48%97.90%92.90%
Candidatus Carsonella ruddii PVBGammaproteobacteria16.618218418016898.90%92.31%97.83%98.36%95.07%
Candidatus Desulforudis audaxviator MP104CBFirmicutes60.8215723012122178098.38%82.52%92.22%95.30%87.37%
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BGammaproteobacteria40.5215021361857155586.37%72.33%86.94%86.66%79.63%
Candidatus Hodgkinia cicadicola DsemBAlphaproteobacteria58.416916815310990.53%64.50%91.07%90.80%77.78%
Candidatus Korarchaeum cryptofilum OPF8AOther Archaea49.0160216831598131899.75%82.27%94.95%97.35%88.61%
Candidatus Koribacter versatilis Ellin345BAcidobacteria58.4477749994730402999.02%84.34%94.62%96.82%89.48%
Candidatus Liberibacter asiaticus str. psy62BAlphaproteobacteria36.511101098103590693.24%81.62%94.26%93.75%87.94%
Candidatus Liberibacter solanacearum CLso-ZC1BAlphaproteobacteria11911134110799992.95%83.88%97.62%95.28%90.75%
Candidatus Nitrospira defluviiBOther Bacteria427140863962334392.77%78.27%96.97%94.87%87.62%
Candidatus Pelagibacter ubique HTCC1062BAlphaproteobacteria29.7135513521345119799.26%88.34%99.48%99.37%93.91%
Candidatus Phytoplasma australienseBFirmicutes27.483983178565893.56%78.43%94.46%94.01%86.45%
Candidatus Phytoplasma maliBOther Bacteria21.449650549144298.99%89.11%97.23%98.11%93.17%
Candidatus Protochlamydia amoebophila UWE25BChlamydiae/Verrucomicrobia34.7203219071833135390.21%66.58%96.12%93.16%81.35%
Candidatus Puniceispirillum marinum IMCC1322BAlphaproteobacteria48.9254726012496217398.00%85.32%95.96%96.98%90.64%
Candidatus Riesia pediculicola USDABGammaproteobacteria28.655549347943286.31%77.84%97.16%91.73%87.50%
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BGammaproteobacteria34.0976113397190499.49%92.62%85.70%92.59%89.16%
Candidatus Solibacter usitatus Ellin6076BAcidobacteria61.9782982047655633697.78%80.93%93.31%95.54%87.12%
Candidatus Sulcia muelleri CARIBBacteroidetes/Chlorobi246262246234100.00%95.12%93.89%96.95%94.51%
Candidatus Sulcia muelleri DMINBBacteroidetes/Chlorobi22.522622422320998.67%92.48%99.55%99.11%96.02%
Candidatus Sulcia muelleri GWSSBBacteroidetes/Chlorobi22.422722722520799.12%91.19%99.12%99.12%95.15%
Candidatus Sulcia muelleri SMDSEMBBacteroidetes/Chlorobi22.6242256242224100.00%92.56%94.53%97.27%93.55%
Candidatus Vesicomyosocius okutanii HABGammaproteobacteria31.693997693484999.47%90.42%95.70%97.58%93.06%
Candidatus Zinderia insecticola CARIBBetaproteobacteria206219206202100.00%98.06%94.06%97.03%96.06%
Capnocytophaga ochracea DSM 7271BBacteroidetes/Chlorobi39.6217021852130194098.16%89.40%97.48%97.82%93.44%
Carboxydothermus hydrogenoformans Z-2901BFirmicutes42.0261924782394210991.41%80.53%96.61%94.01%88.57%
Catenulispora acidiphila DSM 44928BActinobacteria69.8891490358855843899.34%94.66%98.01%98.67%96.33%
Caulobacter crescentus CB15BAlphaproteobacteria67.2373737043509239393.90%64.04%94.74%94.32%79.39%
Caulobacter crescentus NA1000BAlphaproteobacteria67.2387737243641259793.91%66.98%97.77%95.84%82.38%
Caulobacter segnis ATCC 21756BAlphaproteobacteria67.7413842964127405899.73%98.07%96.07%97.90%97.07%
Caulobacter sp. K31BAlphaproteobacteria67.3543954845366498698.66%91.67%97.85%98.25%94.76%
Cellulomonas flavigena DSM 20109BActinobacteria74.1367837213675359299.92%97.66%98.76%99.34%98.21%
Cellulophaga algicola DSM 14237BBacteroidetes/Chlorobi36-38416642804152411199.66%98.68%97.01%98.34%97.84%
Cellulophaga lytica DSM 7489BBacteroidetes/Chlorobi328333033276324999.79%98.96%99.18%99.48%99.07%
Cellvibrio japonicus Ueda107BGammaproteobacteria52.0375536953522282393.79%75.18%95.32%94.56%85.25%
Chelativorans sp. BNC1BAlphaproteobacteria61.1454447034464390298.24%85.87%94.92%96.58%90.39%
Chitinophaga pinensis DSM 2588BBacteroidetes/Chlorobi45.2718573087137674999.33%93.93%97.66%98.50%95.80%
Chlamydia muridarum NiggBChlamydiae/Verrucomicrobia40.391290387773296.16%80.26%97.12%96.64%88.69%
Chlamydia trachomatis 434/BuBChlamydiae/Verrucomicrobia41.387489686477198.86%88.22%96.43%97.64%92.32%
Chlamydia trachomatis A/HAR-13BChlamydiae/Verrucomicrobia41.392091690280398.04%87.28%98.47%98.26%92.88%
Chlamydia trachomatis B/Jali20/OTBChlamydiae/Verrucomicrobia41.387890486978198.97%88.95%96.13%97.55%92.54%
Chlamydia trachomatis B/TZ1A828/OTBChlamydiae/Verrucomicrobia41.388490287378398.76%88.57%96.78%97.77%92.68%
Chlamydia trachomatis D-ECBChlamydiae/Verrucomicrobia87890687262599.32%71.18%96.25%97.78%83.72%
Chlamydia trachomatis D-LCBChlamydiae/Verrucomicrobia87890487162799.20%71.41%96.35%97.78%83.88%
Chlamydia trachomatis D/UW-3/CXBChlamydiae/Verrucomicrobia41.389389788079598.54%89.03%98.10%98.32%93.57%
Chlamydia trachomatis E/11023BChlamydiae/Verrucomicrobia92689787679794.60%86.07%97.66%96.13%91.86%
Chlamydia trachomatis E/150BChlamydiae/Verrucomicrobia92789987379294.17%85.44%97.11%95.64%91.27%
Chlamydia trachomatis G/11074BChlamydiae/Verrucomicrobia91989887980895.65%87.92%97.88%96.77%92.90%
Chlamydia trachomatis G/11222BChlamydiae/Verrucomicrobia92789987780494.61%86.73%97.55%96.08%92.14%
Chlamydia trachomatis G/9301BChlamydiae/Verrucomicrobia92189988281095.77%87.95%98.11%96.94%93.03%
Chlamydia trachomatis G/9768BChlamydiae/Verrucomicrobia92089888081095.65%88.04%98.00%96.82%93.02%
Chlamydia trachomatis L2b/UCH-1/proctitisBChlamydiae/Verrucomicrobia41.387589686577198.86%88.11%96.54%97.70%92.33%
Chlamydia trachomatis Sweden2BChlamydiae/Verrucomicrobia87789986877898.97%88.71%96.55%97.76%92.63%
Chlamydophila abortus S26/3BChlamydiae/Verrucomicrobia39.9938100792879198.93%84.33%92.15%95.54%88.24%
Chlamydophila caviae GPICBChlamydiae/Verrucomicrobia39.21005100397188696.62%88.16%96.81%96.71%92.48%
Chlamydophila felis Fe/C-56BChlamydiae/Verrucomicrobia39.3101399497990996.64%89.73%98.49%97.57%94.11%
Chlamydophila pneumoniae AR39BChlamydiae/Verrucomicrobia40.611161062102788792.03%79.48%96.70%94.36%88.09%
Chlamydophila pneumoniae CWL029BChlamydiae/Verrucomicrobia40.610521063102191597.05%86.98%96.05%96.55%91.51%
Chlamydophila pneumoniae J138BChlamydiae/Verrucomicrobia40.610691056103190296.45%84.38%97.63%97.04%91.01%
Chlamydophila pneumoniae LPCoLNBChlamydiae/Verrucomicrobia40.511061040100893491.14%84.45%96.92%94.03%90.69%
Chlamydophila pneumoniae TW-183BChlamydiae/Verrucomicrobia40.611131055103384792.81%76.10%97.91%95.36%87.01%
Chlorobaculum parvum NCIB 8327BBacteroidetes/Chlorobi55.8204321002032186299.46%91.14%96.76%98.11%93.95%
Chlorobium chlorochromatii CaD3BBacteroidetes/Chlorobi44.3200321001978174998.75%87.32%94.19%96.47%90.75%
Chlorobium limicola DSM 245BBacteroidetes/Chlorobi51.3243425742390210198.19%86.32%92.85%95.52%89.59%
Chlorobium luteolum DSM 273BBacteroidetes/Chlorobi57.3208321982058175398.80%84.16%93.63%96.22%88.89%
Chlorobium phaeobacteroides BS1BBacteroidetes/Chlorobi48.9247025892415210597.77%85.22%93.28%95.53%89.25%
Chlorobium phaeobacteroides DSM 266BBacteroidetes/Chlorobi48.4265028922590222097.74%83.77%89.56%93.65%86.67%
Chlorobium phaeovibrioides DSM 265BBacteroidetes/Chlorobi53.0175317951745150599.54%85.85%97.21%98.38%91.53%
Chlorobium tepidum TLSBBacteroidetes/Chlorobi56.5225620091909143284.62%63.48%95.02%89.82%79.25%
Chloroflexus aggregans DSM 9485BChloroflexi56.4373039553700356299.20%95.50%93.55%96.37%94.52%
Chloroflexus aurantiacus J-10-flBChloroflexi56.7385443363819347299.09%90.09%88.08%93.58%89.08%
Chloroflexus sp. Y-400-flBChloroflexi56.7416043394070389097.84%93.51%93.80%95.82%93.66%
Chloroherpeton thalassium ATCC 35110BBacteroidetes/Chlorobi45.0270928202688249299.22%91.99%95.32%97.27%93.65%
Chromobacterium violaceum ATCC 12472BBetaproteobacteria64.8440842984150330294.15%74.91%96.56%95.35%85.73%
Chromohalobacter salexigens DSM 3043BGammaproteobacteria63.9329833223250287198.54%87.05%97.83%98.19%92.44%
Citrobacter koseri ATCC BAA-895BGammaproteobacteria53.8503242914213330783.72%65.72%98.18%90.95%81.95%
Citrobacter rodentium ICC168BGammaproteobacteria54.6496850574696410894.52%82.69%92.86%93.69%87.78%
Clavibacter michiganensis subsp. michiganensis NCPPB 382BActinobacteria72.5310831563067267598.68%86.07%97.18%97.93%91.62%
Clavibacter michiganensis subsp. sepedonicusBActinobacteria72.4316232443069224697.06%71.03%94.61%95.83%82.82%
Clostridiales genomosp. BVAB3 str. UPII9-5BFirmicutes44.2156814931456134092.86%85.46%97.52%95.19%91.49%
Clostridium acetobutylicum ATCC 824BFirmicutes30.9385038963772352497.97%91.53%96.82%97.40%94.17%
Clostridium beijerinckii NCIMB 8052BFirmicutes29.9502052525007472299.74%94.06%95.34%97.54%94.70%
Clostridium botulinum A str. ATCC 19397BFirmicutes28.2355235193432324796.62%91.41%97.53%97.07%94.47%
Clostridium botulinum A str. ATCC 3502BFirmicutes28.2364235633473317795.36%87.23%97.47%96.42%92.35%
Clostridium botulinum A str. HallBFirmicutes28.2340433973285311896.50%91.60%96.70%96.60%94.15%
Clostridium botulinum A2 str. KyotoBFirmicutes28.2387938363729353696.13%91.16%97.21%96.67%94.18%
Clostridium botulinum A3 str. Loch MareeBFirmicutes28.1398439133833365696.21%91.77%97.96%97.08%94.86%
Clostridium botulinum B str. Eklund 17BBFirmicutes27.5347734923403326297.87%93.82%97.45%97.66%95.63%
Clostridium botulinum B1 str. OkraBFirmicutes28.2384737943719354396.67%92.10%98.02%97.35%95.06%
Clostridium botulinum Ba4 str. 657BFirmicutes28.0400440483860368596.40%92.03%95.36%95.88%93.69%
Clostridium botulinum E3 str. Alaska E43BFirmicutes27.4325932293195307898.04%94.45%98.95%98.49%96.70%
Clostridium botulinum F str. 230613BFirmicutes352838913401321196.40%91.01%87.41%91.90%89.21%
Clostridium botulinum F str. LangelandBFirmicutes28.3365636613542337596.88%92.31%96.75%96.82%94.53%
Clostridium cellulolyticum H10BFirmicutes37.4337735133357328899.41%97.36%95.56%97.48%96.46%
Clostridium cellulovorans 743BBFirmicutes31.0425343804246420299.84%98.80%96.94%98.39%97.87%
Clostridium cf. saccharolyticum K10BFirmicutes307733902724245888.53%79.88%80.35%84.44%80.12%
Clostridium difficile 630BFirmicutes29.1370038293638312298.32%84.38%95.01%96.67%89.70%
Clostridium difficile CD196BFirmicutes344936333424279499.28%81.01%94.25%96.76%87.63%
Clostridium difficile R20291BFirmicutes28.8351237043468282198.75%80.32%93.63%96.19%86.98%
Clostridium kluyveri DSM 555BFirmicutes32.0391339733814354497.47%90.57%96.00%96.73%93.28%
Clostridium kluyveri NBRC 12016BFirmicutes32.0352338643475245698.64%69.71%89.93%94.29%79.82%
Clostridium ljungdahlii DSM 13528BFirmicutes23418442504128385298.66%92.07%97.13%97.90%94.60%
Clostridium novyi NTBFirmicutes28.9232623202285209098.24%89.85%98.49%98.36%94.17%
Clostridium perfringens ATCC 13124BFirmicutes28.4287528792829264198.40%91.86%98.26%98.33%95.06%
Clostridium perfringens SM101BFirmicutes28.2261826592578238898.47%91.21%96.95%97.71%94.08%
Clostridium perfringens str. 13BFirmicutes28.5272327312700249999.16%91.77%98.86%99.01%95.32%
Clostridium phytofermentans ISDgBFirmicutes35.3390440953880358199.39%91.73%94.75%97.07%93.24%
Clostridium saccharolyticum WM1BFirmicutes28415242414137409699.64%98.65%97.55%98.59%98.10%
Clostridium sticklandii DSM 519BFirmicutes257325562511230597.59%89.58%98.24%97.91%93.91%
Clostridium tetani E88BFirmicutes28.6243227992402169398.77%69.61%85.82%92.29%77.71%
Clostridium thermocellum ATCC 27405BFirmicutes39.0319133983158284198.97%89.03%92.94%95.95%90.98%
Clostridium thermocellum DSM 1313BFirmicutes290430682893285299.62%98.21%94.30%96.96%96.25%
Colwellia psychrerythraea 34HBGammaproteobacteria38.0490945124403391189.69%79.67%97.58%93.64%88.63%
Comamonas testosteroni CNB-1BBetaproteobacteria61.5489649594780375697.63%76.72%96.39%97.01%86.55%
Conexibacter woesei DSM 14684BActinobacteria72.7591459275894562099.66%95.03%99.44%99.55%97.24%
Coprococcus catus GD/7BFirmicutes298633032849266295.41%89.15%86.25%90.83%87.70%
Coprococcus sp. ART55/1BFirmicutes212827532057189596.66%89.05%74.72%85.69%81.88%
Coprothermobacter proteolyticus DSM 5265BFirmicutes44.8148214171383113493.32%76.52%97.60%95.46%87.06%
Coraliomargarita akajimensis DSM 45221BOther Bacteria53.6311931463116300099.90%96.18%99.05%99.48%97.62%
Corynebacterium aurimucosum ATCC 700975BActinobacteria60.6255726622518214398.47%83.81%94.59%96.53%89.20%
Corynebacterium efficiens YS-314BActinobacteria63.0299928782787162592.93%54.18%96.84%94.88%75.51%
Corynebacterium glutamicum ATCC 13032BActinobacteria53.8309930712948203995.13%65.80%95.99%95.56%80.90%
Corynebacterium glutamicum RBActinobacteria54.1308031462938236795.39%76.85%93.39%94.39%85.12%
Corynebacterium jeikeium K411BActinobacteria61.4212121372082175698.16%82.79%97.43%97.79%90.11%
Corynebacterium kroppenstedtii DSM 44385BActinobacteria57.5201821281974161797.82%80.13%92.76%95.29%86.45%
Corynebacterium pseudotuberculosis 1002BActinobacteria205821381967161495.58%78.43%92.00%93.79%85.21%
Corynebacterium pseudotuberculosis C231BActinobacteria205421391972163296.01%79.45%92.19%94.10%85.82%
Corynebacterium pseudotuberculosis FRC41BActinobacteria211121392049174697.06%82.71%95.79%96.43%89.25%
Corynebacterium pseudotuberculosis I19BActinobacteria206721451974162895.50%78.76%92.03%93.76%85.39%
Corynebacterium urealyticum DSM 7109BActinobacteria64.2202420111977159197.68%78.61%98.31%97.99%88.46%
Coxiella burnetii CbuG_Q212BGammaproteobacteria42.6187320691619118986.44%63.48%78.25%82.34%70.87%
Coxiella burnetii CbuK_Q154BGammaproteobacteria42.6194821361691125786.81%64.53%79.17%82.99%71.85%
Coxiella burnetii Dugway 5J108-111BGammaproteobacteria42.4204721111801138287.98%67.51%85.32%86.65%76.41%
Coxiella burnetii RSA 331BGammaproteobacteria42.7197621211734149187.75%75.46%81.75%84.75%78.60%
Coxiella burnetii RSA 493BGammaproteobacteria42.6185520581620121587.33%65.50%78.72%83.02%72.11%
Croceibacter atlanticus HTCC2559BBacteroidetes/Chlorobi33.9270126802658235698.41%87.23%99.18%98.79%93.20%
Cronobacter sakazakii ATCC BAA-894BGammaproteobacteria56.7444341584063320091.45%72.02%97.72%94.58%84.87%
Cronobacter turicensis z3032BGammaproteobacteria57.3445641994131265692.71%59.61%98.38%95.54%78.99%
Cryptobacterium curtum DSM 15641BActinobacteria50.9135613671325119097.71%87.76%96.93%97.32%92.34%
Cupriavidus metallidurans CH34BBetaproteobacteria63.5675563646231517992.24%76.67%97.91%95.08%87.29%
Cupriavidus taiwanensisBBetaproteobacteria67.0597557665690462295.23%77.36%98.68%96.96%88.02%
Cyanothece sp. ATCC 51142BCyanobacteria37.9530650914998385194.20%72.58%98.17%96.18%85.38%
Cyanothece sp. PCC 7424BCyanobacteria38.5569359145640541299.07%95.06%95.37%97.22%95.22%
Cyanothece sp. PCC 7425BCyanobacteria50.6532254415244498098.53%93.57%96.38%97.46%94.98%
Cyanothece sp. PCC 7822BCyanobacteria40.1663369976600648599.50%97.77%94.33%96.91%96.05%
Cyanothece sp. PCC 8801BCyanobacteria39.8436345404329414399.22%94.96%95.35%97.29%95.16%
Cyanothece sp. PCC 8802BCyanobacteria39.8443845784395420599.03%94.75%96.00%97.52%95.38%
Cytophaga hutchinsonii ATCC 33406BBacteroidetes/Chlorobi38.8378537803675302397.09%79.87%97.22%97.16%88.55%
Dechloromonas aromatica RCBBBetaproteobacteria59.2417242434114365898.61%87.68%96.96%97.78%92.32%
Deferribacter desulfuricans SSM1BOther Bacteria30.3240624682391221299.38%91.94%96.88%98.13%94.41%
Dehalococcoides ethenogenes 195BChloroflexi48.9157915431464127892.72%80.94%94.88%93.80%87.91%
Dehalococcoides sp. BAV1BChloroflexi47.2137114091347124398.25%90.66%95.60%96.92%93.13%
Dehalococcoides sp. CBDB1BChloroflexi47.0145814371403123896.23%84.91%97.63%96.93%91.27%
Dehalococcoides sp. GTBChloroflexi47.3141514281408138199.51%97.60%98.60%99.05%98.10%
Dehalococcoides sp. VSBChloroflexi47.3143814601412126498.19%87.90%96.71%97.45%92.31%
Dehalogenimonas lykanthroporepellens BL-DC-9BChloroflexi55.0165817191650159399.52%96.08%95.99%97.75%96.03%
Deinococcus deserti VCD115BDeinococcus-Thermus63.0345936313349268996.82%77.74%92.23%94.53%84.99%
Deinococcus geothermalis DSM 11300BDeinococcus-Thermus66.5305431572999249498.20%81.66%95.00%96.60%88.33%
Deinococcus maricopensis DSM 21211BDeinococcus-Thermus326333023260321599.91%98.53%98.73%99.32%98.63%
Deinococcus proteolyticus MRPBDeinococcus-Thermus265527482649258999.77%97.51%96.40%98.09%96.96%
Deinococcus radiodurans R1BDeinococcus-Thermus66.6310232472999197196.68%63.54%92.36%94.52%77.95%
Delftia acidovorans SPH-1BBetaproteobacteria66.5604061225925496298.10%82.15%96.78%97.44%89.47%
Denitrovibrio acetiphilus DSM 12809BOther Bacteria42.5295430212944286599.66%96.99%97.45%98.56%97.22%
Desulfarculus baarsii DSM 2075BDeltaproteobacteria327732973265321699.63%98.14%99.03%99.33%98.58%
Desulfatibacillum alkenivorans AK-01BDeltaproteobacteria54.5525652885206502599.05%95.61%98.45%98.75%97.03%
Desulfitobacterium hafniense DCB-2BFirmicutes47.5487849244817468998.75%96.13%97.83%98.29%96.98%
Desulfitobacterium hafniense Y51BFirmicutes47.4506054164867316896.19%62.61%89.86%93.02%76.24%
Desulfobacterium autotrophicum HRM2BDeltaproteobacteria48.8494949344694411194.85%83.07%95.14%94.99%89.10%
Desulfobulbus propionicus DSM 2032BDeltaproteobacteria327833323245319598.99%97.47%97.39%98.19%97.43%
Desulfococcus oleovorans Hxd3BDeltaproteobacteria56.2326533153208283898.25%86.92%96.77%97.51%91.85%
Desulfohalobium retbaense DSM 5692BDeltaproteobacteria57.3252525542493241098.73%95.45%97.61%98.17%96.53%
Desulfomicrobium baculatum DSM 4028BDeltaproteobacteria58.6343534553392327498.75%95.31%98.18%98.46%96.74%
Desulfotalea psychrophila LSv54BDeltaproteobacteria46.6323732462996216792.55%66.94%92.30%92.43%79.62%
Desulfotomaculum acetoxidans DSM 771BFirmicutes41.6404543003955381897.78%94.39%91.98%94.88%93.18%
Desulfotomaculum reducens MI-1BFirmicutes42.3327635223238294598.84%89.90%91.94%95.39%90.92%
Desulfovibrio aespoeensis Aspo-2BDeltaproteobacteria62.7330333423295322899.76%97.73%98.59%99.18%98.16%
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774BDeltaproteobacteria58.1235423982334224699.15%95.41%97.33%98.24%96.37%
Desulfovibrio desulfuricans subsp. desulfuricans str. G20BDeltaproteobacteria57.8377833483250282686.02%74.80%97.07%91.55%85.94%
Desulfovibrio magneticus RS-1BDeltaproteobacteria62.7470645554384352793.16%74.95%96.25%94.70%85.60%
Desulfovibrio salexigens DSM 2638BDeltaproteobacteria47.1380638433791368199.61%96.72%98.65%99.13%97.68%
Desulfovibrio vulgaris DP4BDeltaproteobacteria63.2309231403010264697.35%85.58%95.86%96.60%90.72%
Desulfovibrio vulgaris RCH1BDeltaproteobacteria63.3322032483201314999.41%97.80%98.55%98.98%98.17%
Desulfovibrio vulgaris str. 'Miyazaki F'BDeltaproteobacteria67.1317932493170296499.72%93.24%97.57%98.64%95.40%
Desulfovibrio vulgaris str. HildenboroughBDeltaproteobacteria63.3353033093111251388.13%71.19%94.02%91.07%82.60%
Desulfurispirillum indicum S5BOther Bacteria56.2255226462543251399.65%98.47%96.11%97.88%97.29%
Desulfurivibrio alkaliphilus AHT2BDeltaproteobacteria60.3262026972610256099.62%97.71%96.77%98.20%97.24%
Desulfurobacterium thermolithotrophum DSM 11699BAquificae150515561503148399.87%98.54%96.59%98.23%97.57%
Desulfurococcus kamchatkensis 1221nACrenarchaeota45.314701434139995695.17%65.03%97.56%96.36%81.30%
Desulfurococcus mucosus DSM 2162ACrenarchaeota1345137313451329100.00%98.81%97.96%98.98%98.39%
Dichelobacter nodosus VCS1703ABGammaproteobacteria44.4128112851238113296.64%88.37%96.34%96.49%92.36%
Dickeya dadantii 3937BGammaproteobacteria457242874159322290.97%70.47%97.01%93.99%83.74%
Dickeya dadantii Ech586BGammaproteobacteria53.6414242014126404599.61%97.66%98.21%98.91%97.94%
Dickeya dadantii Ech703BGammaproteobacteria55.0397040083923378898.82%95.42%97.88%98.35%96.65%
Dickeya zeae Ech1591BGammaproteobacteria54.5415942254125395599.18%95.09%97.63%98.41%96.36%
Dictyoglomus thermophilum H-6-12BOther Bacteria33.7191218901862177697.38%92.89%98.52%97.95%95.70%
Dictyoglomus turgidum DSM 6724BOther Bacteria34.0174418181741169399.83%97.08%95.76%97.80%96.42%
Dinoroseobacter shibae DFL 12BAlphaproteobacteria65.5419542834145370998.81%88.41%96.78%97.79%92.60%
Dyadobacter fermentans DSM 18053BBacteroidetes/Chlorobi51.5571958665671501799.16%87.73%96.68%97.92%92.20%
Edwardsiella ictaluri 93-146BGammaproteobacteria57.4378634413315274787.56%72.56%96.34%91.95%84.45%
Edwardsiella tarda EIB202BGammaproteobacteria59.7359033313261277290.84%77.21%97.90%94.37%87.56%
Edwardsiella tarda FL6-60BGammaproteobacteria325632503143263896.53%81.02%96.71%96.62%88.86%
Eggerthella lenta DSM 2243BActinobacteria64.2307131163056291499.51%94.89%98.07%98.79%96.48%
Ehrlichia canis str. JakeBAlphaproteobacteria29.092597892084199.46%90.92%94.07%96.76%92.49%
Ehrlichia chaffeensis str. ArkansasBAlphaproteobacteria30.1110493690778182.16%70.74%96.90%89.53%83.82%
Ehrlichia ruminantium str. GardelBAlphaproteobacteria27.595197392471197.16%74.76%94.96%96.06%84.86%
Ehrlichia ruminantium str. WelgevondenBAlphaproteobacteria27.591896890880598.91%87.69%93.80%96.36%90.75%
Ehrlichia ruminantium str. WelgevondenBAlphaproteobacteria27.595997493371697.29%74.66%95.79%96.54%85.23%
Elusimicrobium minutum Pei191BOther Bacteria40.0152915411518148399.28%96.99%98.51%98.89%97.75%
Enterobacter cloacae SCF1BGammaproteobacteria440243914355426098.93%96.77%99.18%99.06%97.98%
Enterobacter cloacae subsp. cloacae ATCC 13047BGammaproteobacteria54.6551954575267464595.43%84.16%96.52%95.98%90.34%
Enterobacter cloacae subsp. cloacae NCTC 9394BGammaproteobacteria372645833581292396.11%78.45%78.14%87.12%78.29%
Enterobacter sp. 638BGammaproteobacteria52.9424144104208384999.22%90.76%95.42%97.32%93.09%
Enterococcus faecalis 62BFirmicutes302629722906273096.03%90.22%97.78%96.91%94.00%
Enterococcus faecalis V583BFirmicutes37.4326532713129283695.83%86.86%95.66%95.75%91.26%
Enterococcus sp. 7L76BFirmicutes229529872250215698.04%93.94%75.33%86.68%84.63%
Erwinia amylovora ATCC 49946BGammaproteobacteria53.6349534963277297093.76%84.98%93.74%93.75%89.36%
Erwinia amylovora CFBP1430BGammaproteobacteria53.6373534193225288186.35%77.14%94.33%90.34%85.73%
Erwinia billingiae Eb661BGammaproteobacteria493248944748427896.27%86.74%97.02%96.64%91.88%
Erwinia pyrifoliae DSM 12163BGammaproteobacteria53.4403837493527283787.35%70.26%94.08%90.71%82.17%
Erwinia pyrifoliae Ep1/96BGammaproteobacteria53.4375537403569313295.05%83.41%95.43%95.24%89.42%
Erwinia sp. Ejp617BGammaproteobacteria367336053405284292.70%77.38%94.45%93.58%85.91%
Erwinia tasmaniensis Et1/99BGammaproteobacteria53.4369637213561303696.35%82.14%95.70%96.02%88.92%
Erythrobacter litoralis HTCC2594BAlphaproteobacteria63.1301029642925247597.18%82.23%98.68%97.93%90.46%
Escherichia coli 'BL21-Gold(DE3)pLysS AG'BGammaproteobacteria50.8422842994129400097.66%94.61%96.05%96.85%95.33%
Escherichia coli 042BGammaproteobacteria50.5492150544754415696.61%84.45%94.06%95.34%89.26%
Escherichia coli 536BGammaproteobacteria50.5468645434439396294.73%84.55%97.71%96.22%91.13%
Escherichia coli 55989BGammaproteobacteria50.7491948454704405595.63%82.44%97.09%96.36%89.76%
Escherichia coli ABU 83972BGammaproteobacteria479747414587412895.62%86.05%96.75%96.19%91.40%
Escherichia coli APEC O1BGammaproteobacteria50.3489152594683345795.75%70.68%89.05%92.40%79.86%
Escherichia coli ATCC 8739BGammaproteobacteria50.9418143934140395799.02%94.64%94.24%96.63%94.44%
Escherichia coli B str. REL606BGammaproteobacteria50.8420943214112370097.70%87.91%95.16%96.43%91.54%
Escherichia coli BL21(DE3)BGammaproteobacteria50.8415942724065367297.74%88.29%95.15%96.45%91.72%
Escherichia coli BL21(DE3)BGammaproteobacteria50.8427442724136372696.77%87.18%96.82%96.79%92.00%
Escherichia coli BW2952BGammaproteobacteria50.8408442804021374298.46%91.63%93.95%96.20%92.79%
Escherichia coli CFT073BGammaproteobacteria50.5537949024664312486.71%58.08%95.14%90.93%76.61%
Escherichia coli DH1BGammaproteobacteria50.8416043094131403399.30%96.95%95.87%97.59%96.41%
Escherichia coli E24377ABGammaproteobacteria50.6499850074539410590.82%82.13%90.65%90.73%86.39%
Escherichia coli ED1aBGammaproteobacteria50.7512449874838409494.42%79.90%97.01%95.72%88.46%
Escherichia coli ETEC H10407BGammaproteobacteria472549244624413797.86%87.56%93.91%95.88%90.73%
Escherichia coli HSBGammaproteobacteria50.8438443234085370293.18%84.44%94.49%93.84%89.47%
Escherichia coli IAI1BGammaproteobacteria50.8444343284235376495.32%84.72%97.85%96.58%91.28%
Escherichia coli IAI39BGammaproteobacteria50.6489348624722398796.51%81.48%97.12%96.81%89.30%
Escherichia coli IHE3034BGammaproteobacteria50.7475848164512412994.83%86.78%93.69%94.26%90.23%
Escherichia coli KO11BGammaproteobacteria465347224598443898.82%95.38%97.37%98.10%96.38%
Escherichia coli O103:H2 str. 12009BGammaproteobacteria50.6535453385195480897.03%89.80%97.32%97.18%93.56%
Escherichia coli O111:H- str. 11128BGammaproteobacteria50.4573256905519503296.28%87.79%96.99%96.64%92.39%
Escherichia coli O127:H6 str. E2348/69BGammaproteobacteria50.5482448734629429795.96%89.08%94.99%95.48%92.03%
Escherichia coli O157:H7 str. EC4115BGammaproteobacteria50.4547955485047448692.12%81.88%90.97%91.54%86.42%
Escherichia coli O157:H7 str. EDL933BGammaproteobacteria50.4544754195186407395.21%74.78%95.70%95.45%85.24%
Escherichia coli O157:H7 str. SakaiBGammaproteobacteria50.5544253985168423794.97%77.86%95.74%95.35%86.80%
Escherichia coli O157:H7 str. TW14359BGammaproteobacteria50.5537554445095463294.79%86.18%93.59%94.19%89.88%
Escherichia coli O26:H11 str. 11368BGammaproteobacteria50.6579557715594516396.53%89.09%96.93%96.73%93.01%
Escherichia coli O55:H7 str. CB9615BGammaproteobacteria50.5512251514891408995.49%79.83%94.95%95.22%87.39%
Escherichia coli O83:H1 str. NRG 857CBGammaproteobacteria458345424447413197.03%90.14%97.91%97.47%94.02%
Escherichia coli RS218BGammaproteobacteria46.96262565190.32%82.26%90.32%90.32%86.29%
Escherichia coli S88BGammaproteobacteria50.6499148874771403895.59%80.91%97.63%96.61%89.27%
Escherichia coli SE11BGammaproteobacteria50.7500348954741414394.76%82.81%96.85%95.81%89.83%
Escherichia coli SE15BGammaproteobacteria50.7448944484350385096.90%85.77%97.80%97.35%91.78%
Escherichia coli SMS-3-5BGammaproteobacteria50.5491448224594417193.49%84.88%95.27%94.38%90.08%
Escherichia coli UM146BGammaproteobacteria478548044611427696.36%89.36%95.98%96.17%92.67%
Escherichia coli UMN026BGammaproteobacteria50.7510750214885416695.65%81.57%97.29%96.47%89.43%
Escherichia coli UTI89BGammaproteobacteria50.6521248394664327689.49%62.85%96.38%92.93%79.62%
Escherichia coli WBGammaproteobacteria470147054648451898.87%96.11%98.79%98.83%97.45%
Escherichia coli str. K-12 substr. DH10BBGammaproteobacteria50.8419143984099375397.80%89.55%93.20%95.50%91.38%
Escherichia coli str. K-12 substr. MG1655BGammaproteobacteria50.8426743134119382596.53%89.64%95.50%96.02%92.57%
Escherichia coli str. K-12 substr. W3110BGammaproteobacteria50.8433743264242387997.81%89.44%98.06%97.93%93.75%
Escherichia fergusonii ATCC 35469BGammaproteobacteria49.9437743174222336796.46%76.92%97.80%97.13%87.36%
Ethanoligenens harbinense YUAN-3BFirmicutes55.6270327842686263499.37%97.45%96.48%97.93%96.96%
Eubacterium cylindroides T2-87BFirmicutes144420291394128696.54%89.06%68.70%82.62%78.88%
Eubacterium eligens ATCC 27750BFirmicutes37.6276626532629206095.05%74.48%99.10%97.07%86.79%
Eubacterium limosum KIST612BFirmicutes451140253999381688.65%84.59%99.35%94.00%91.97%
Eubacterium rectaleBFirmicutes289831652794265596.41%91.61%88.28%92.34%89.95%
Eubacterium rectaleBFirmicutes321235383092294296.26%91.59%87.39%91.83%89.49%
Eubacterium rectale ATCC 33656BFirmicutes41.5362432713226259889.02%71.69%98.62%93.82%85.16%
Eubacterium siraeumBFirmicutes234826552201188593.74%80.28%82.90%88.32%81.59%
Eubacterium siraeum V10Sc8aBFirmicutes221225112088179594.39%81.15%83.15%88.77%82.15%
Exiguobacterium sibiricum 255-15BFirmicutes47.7301130803004292799.77%97.21%97.53%98.65%97.37%
Exiguobacterium sp. AT1bBFirmicutes48.5302130443012293099.70%96.99%98.95%99.33%97.97%
Faecalibacterium prausnitziiBFirmicutes274630562636246695.99%89.80%86.26%91.13%88.03%
Faecalibacterium prausnitzii L2-6BFirmicutes276031702643245995.76%89.09%83.38%89.57%86.23%
Ferrimonas balearica DSM 9799BGammaproteobacteria60378138003765362599.58%95.87%99.08%99.33%97.48%
Ferroglobus placidus DSM 10642AEuryarchaeota44.1247325992472243499.96%98.42%95.11%97.54%96.77%
Fervidobacterium nodosum Rt17-B1BThermotogae35.0175018291746160599.77%91.71%95.46%97.62%93.59%
Fibrobacter succinogenes subsp. succinogenes S85BOther Bacteria287731552796223997.18%77.82%88.62%92.90%83.22%
Fibrobacter succinogenes subsp. succinogenes S85BOther Bacteria48.1308931263065294299.22%95.24%98.05%98.64%96.64%
Filifactor alocis ATCC 35896BFirmicutes35.4164116921625140099.02%85.31%96.04%97.53%90.68%
Finegoldia magna ATCC 29328BFirmicutes32.1181318461795165999.01%91.51%97.24%98.12%94.37%
Flavobacteriaceae bacterium 3519-10BBacteroidetes/Chlorobi42.7253425132410188295.11%74.27%95.90%95.50%85.09%
Flavobacterium johnsoniae UW101BBacteroidetes/Chlorobi34.1501751994982451699.30%90.01%95.83%97.56%92.92%
Flavobacterium psychrophilum JIP02/86BBacteroidetes/Chlorobi32.5243225162397223198.56%91.74%95.27%96.92%93.50%
Francisella novicida U112BGammaproteobacteria32.5171917991717160299.88%93.19%95.44%97.66%94.32%
Francisella philomiragia subsp. philomiragia ATCC 25017BGammaproteobacteria32.6191319771907181399.69%94.77%96.46%98.07%95.62%
Francisella tularensis subsp. holarctica FTNF002-00BGammaproteobacteria32.2152520971489131197.64%85.97%71.01%84.32%78.49%
Francisella tularensis subsp. holarctica LVSBGammaproteobacteria32.2190721001877172798.43%90.56%89.38%93.90%89.97%
Francisella tularensis subsp. holarctica OSU18BGammaproteobacteria32.2151921151479128797.37%84.73%69.93%83.65%77.33%
Francisella tularensis subsp. mediasiatica FSC147BGammaproteobacteria32.3140721021398131499.36%93.39%66.51%82.93%79.95%
Francisella tularensis subsp. tularensis FSC198BGammaproteobacteria32.3161720311587134498.14%83.12%78.14%88.14%80.63%
Francisella tularensis subsp. tularensis NE061598BGammaproteobacteria32.3183720311761161395.86%87.81%86.71%91.28%87.26%
Francisella tularensis subsp. tularensis SCHU S4BGammaproteobacteria32.3160520311579134498.38%83.74%77.74%88.06%80.74%
Francisella tularensis subsp. tularensis WY96-3418BGammaproteobacteria32.3158320261551142397.98%89.89%76.55%87.27%83.22%
Frankia alni ACN14aBActinobacteria72.8672360845935326988.28%48.62%97.55%92.91%73.09%
Frankia sp. CcI3BActinobacteria70.1449947864337326196.40%72.48%90.62%93.51%81.55%
Frankia sp. EAN1pecBActinobacteria71.2719275826906535496.02%74.44%91.08%93.55%82.76%
Frankia sp. EuI1cBActinobacteria72.3708371897074688799.87%97.23%98.40%99.14%97.82%
Fusobacterium nucleatum subsp. nucleatum ATCC 25586BFusobacteria27.2206620221994141496.52%68.44%98.62%97.57%83.53%
Gallionella capsiferriformans ES-2BBetaproteobacteria52.8289329282878282299.48%97.55%98.29%98.89%97.92%
Gardnerella vaginalis 409-05BActinobacteria42.0125912731197106895.08%84.83%94.03%94.55%89.43%
Gardnerella vaginalis ATCC 14019BActinobacteria41.5136612991273105093.19%76.87%98.00%95.60%87.43%
Gemmatimonas aurantiaca T-27BOther Bacteria64.3393640033914280699.44%71.29%97.78%98.61%84.53%
Geobacillus kaustophilus HTA426BFirmicutes52.0354035713389289595.73%81.78%94.90%95.32%88.34%
Geobacillus sp. C56-T3BFirmicutes331436093302326299.64%98.43%91.49%95.57%94.96%
Geobacillus sp. WCH70BFirmicutes42.8316734483134303298.96%95.74%90.89%94.93%93.32%
Geobacillus sp. Y4.1MC1BFirmicutes43.8366738543656362199.70%98.75%94.86%97.28%96.80%
Geobacillus sp. Y412MC52BFirmicutes52.4345836093441337999.51%97.72%95.34%97.43%96.53%
Geobacillus sp. Y412MC61BFirmicutes52.3344436073406325998.90%94.63%94.43%96.66%94.53%
Geobacillus thermodenitrificans NG80-2BFirmicutes48.9344535643322254596.43%73.88%93.21%94.82%83.54%
Geobacter bemidjiensis BemBDeltaproteobacteria60.3402640233922374197.42%92.92%97.49%97.45%95.21%
Geobacter lovleyi SZBDeltaproteobacteria54.7368437183653354099.16%96.09%98.25%98.71%97.17%
Geobacter metallireducens GS-15BDeltaproteobacteria59.5353235953466311898.13%88.28%96.41%97.27%92.35%
Geobacter sp. FRC-32BDeltaproteobacteria53.5379838343775366999.39%96.60%98.46%98.93%97.53%
Geobacter sp. M18BDeltaproteobacteria61.3443444854407433199.39%97.68%98.26%98.83%97.97%
Geobacter sp. M21BDeltaproteobacteria60.5408041024044391899.12%96.03%98.59%98.85%97.31%
Geobacter sulfurreducens KN400BDeltaproteobacteria332133433272301698.52%90.82%97.88%98.20%94.35%
Geobacter sulfurreducens PCABDeltaproteobacteria60.9344834193282278795.19%80.83%95.99%95.59%88.41%
Geobacter uraniireducens Rf4BDeltaproteobacteria54.2435345514268377798.05%86.77%93.78%95.91%90.27%
Geodermatophilus obscurus DSM 43160BActinobacteria74.0480250894774449099.42%93.50%93.81%96.61%93.66%
Gloeobacter violaceus PCC 7421BCyanobacteria62.0443245174325323297.59%72.92%95.75%96.67%84.34%
Gluconacetobacter diazotrophicus PAl 5BAlphaproteobacteria66.3391437543559238990.93%61.04%94.81%92.87%77.92%
Gluconacetobacter diazotrophicus PAl 5BAlphaproteobacteria66.3346936143442324399.22%93.49%95.24%97.23%94.36%
Gluconobacter oxydans 621HBAlphaproteobacteria60.8266428372570208896.47%78.38%90.59%93.53%84.48%
Gordonia bronchialis DSM 43247BActinobacteria67.0469650044664425799.32%90.65%93.21%96.26%91.93%
Gordonibacter pamelaeae 7-10-1-bBActinobacteria202432271960157496.84%77.77%60.74%78.79%69.25%
Gramella forsetii KT0803BBacteroidetes/Chlorobi36.6358434483401306294.89%85.44%98.64%96.77%92.04%
Granulibacter bethesdensis CGDNIH1BAlphaproteobacteria59.1243824452327151095.45%61.94%95.17%95.31%78.55%
Haemophilus ducreyi 35000HPBGammaproteobacteria38.2171816891572141991.50%82.60%93.07%92.29%87.83%
Haemophilus influenzae 10810BGammaproteobacteria190819021858172497.38%90.36%97.69%97.53%94.02%
Haemophilus influenzae 86-028NPBGammaproteobacteria38.2179518361762155098.16%86.35%95.97%97.07%91.16%
Haemophilus influenzae F3031BGammaproteobacteria177519491753162398.76%91.44%89.94%94.35%90.69%
Haemophilus influenzae F3047BGammaproteobacteria176819811748159498.87%90.16%88.24%93.55%89.20%
Haemophilus influenzae PittEEBGammaproteobacteria38.0162117771555146895.93%90.56%87.51%91.72%89.03%
Haemophilus influenzae PittGGBGammaproteobacteria38.0166719661596149995.74%89.92%81.18%88.46%85.55%
Haemophilus influenzae R2846BGammaproteobacteria38.0163517021626148499.45%90.76%95.53%97.49%93.15%
Haemophilus influenzae R2866BGammaproteobacteria38.1179518321782164099.28%91.36%97.27%98.27%94.32%
Haemophilus influenzae Rd KW20BGammaproteobacteria38.2171117481665142297.31%83.11%95.25%96.28%89.18%
Haemophilus parainfluenzae T3T1BGammaproteobacteria198619711942181297.78%91.24%98.53%98.16%94.88%
Haemophilus parasuis SH0165BGammaproteobacteria40.0202222081946174196.24%86.10%88.13%92.19%87.12%
Haemophilus somnus 129PTBGammaproteobacteria37.2179718291766149998.27%83.42%96.56%97.42%89.99%
Haemophilus somnus 2336BGammaproteobacteria37.4198120681956183198.74%92.43%94.58%96.66%93.51%
Hahella chejuensis KCTC 2396BGammaproteobacteria53.9678363876144543590.58%80.13%96.20%93.39%88.16%
Halalkalicoccus jeotgali B3AEuryarchaeota387039303721319396.15%82.51%94.68%95.42%88.59%
Halanaerobium praevalens DSM 2228BFirmicutes206821192066204999.90%99.08%97.50%98.70%98.29%
Halanaerobium sp. 'sapolanicus'BFirmicutes229424262290226299.83%98.61%94.39%97.11%96.50%
Haliangium ochraceum DSM 14365BDeltaproteobacteria69.5672068686682626199.43%93.17%97.29%98.36%95.23%
Haloarcula marismortui ATCC 43049AEuryarchaeota61.1424044524157345598.04%81.49%93.37%95.71%87.43%
Halobacterium salinarum R1AEuryarchaeota65.7288727712666232692.34%80.57%96.21%94.28%88.39%
Halobacterium sp. NRC-1AEuryarchaeota65.9260526942494196695.74%75.47%92.58%94.16%84.02%
Haloferax volcanii DS2AEuryarchaeota65.5401840243872346696.37%86.26%96.22%96.29%91.24%
Halogeometricum borinquense DSM 11551AEuryarchaeota59.9389839533811330397.77%84.74%96.41%97.09%90.57%
Halomicrobium mukohataei DSM 12286AEuryarchaeota65.5334933863320311099.13%92.86%98.05%98.59%95.46%
Halomonas elongata DSM 2581BGammaproteobacteria347337473466307799.80%88.60%92.50%96.15%90.55%
Haloquadratum walsbyi DSM 16790AEuryarchaeota47.9286230722648222092.52%77.57%86.20%89.36%81.88%
Halorhabdus utahensis DSM 12940AEuryarchaeota62.9299830432980273399.40%91.16%97.93%98.66%94.55%
Halorhodospira halophila SL1BGammaproteobacteria68.0240724622391216399.34%89.86%97.12%98.23%93.49%
Halorubrum lacusprofundi ATCC 49239AEuryarchaeota64.0356236433502322598.32%90.54%96.13%97.22%93.33%
Haloterrigena turkmenica DSM 5511AEuryarchaeota64.3511352265049474598.75%92.80%96.61%97.68%94.71%
Halothermothrix orenii H 168BFirmicutes37.9234224192321214799.10%91.67%95.95%97.53%93.81%
Halothiobacillus neapolitanus c2BGammaproteobacteria54.7235624152331224198.94%95.12%96.52%97.73%95.82%
Helicobacter acinonychis str. SheebaBEpsilonproteobacteria38.2161815471514135193.57%83.50%97.87%95.72%90.68%
Helicobacter felis ATCC 49179BEpsilonproteobacteria167316641656160998.98%96.17%99.52%99.25%97.85%
Helicobacter hepaticus ATCC 51449BEpsilonproteobacteria35.9187518021762153793.97%81.97%97.78%95.88%89.88%
Helicobacter mustelae 12198BEpsilonproteobacteria141814261357120895.70%85.19%95.16%95.43%90.18%
Helicobacter pyloriBEpsilonproteobacteria38.9140515091395123299.29%87.69%92.45%95.87%90.07%
Helicobacter pylori 26695BEpsilonproteobacteria38.9156615791511130496.49%83.27%95.69%96.09%89.48%
Helicobacter pylori 35ABEpsilonproteobacteria147015001397121795.03%82.79%93.13%94.08%87.96%
Helicobacter pylori 51BEpsilonproteobacteria38.8141515151395122698.59%86.64%92.08%95.33%89.36%
Helicobacter pylori 908BEpsilonproteobacteria159515111467131291.97%82.26%97.09%94.53%89.67%
Helicobacter pylori B38BEpsilonproteobacteria39.2152815021486131497.25%85.99%98.93%98.09%92.46%
Helicobacter pylori B8BEpsilonproteobacteria172115791555143990.35%83.61%98.48%94.42%91.05%
Helicobacter pylori Cuz20BEpsilonproteobacteria156415361479138794.57%88.68%96.29%95.43%92.49%
Helicobacter pylori G27BEpsilonproteobacteria38.9150415771462123097.21%81.78%92.71%94.96%87.24%
Helicobacter pylori Gambia94/24BEpsilonproteobacteria160515891494138993.08%86.54%94.02%93.55%90.28%
Helicobacter pylori HPAG1BEpsilonproteobacteria39.1154415081487129296.31%83.68%98.61%97.46%91.14%
Helicobacter pylori India7BEpsilonproteobacteria160015721493139293.31%87.00%94.97%94.14%90.99%
Helicobacter pylori J99BEpsilonproteobacteria39.2147915051448132897.90%89.79%96.21%97.06%93.00%
Helicobacter pylori Lithuania75BEpsilonproteobacteria156515551461134293.35%85.75%93.95%93.65%89.85%
Helicobacter pylori P12BEpsilonproteobacteria38.8157715871534141097.27%89.41%96.66%96.97%93.04%
Helicobacter pylori PeCan4BEpsilonproteobacteria156315321467138493.86%88.55%95.76%94.81%92.15%
Helicobacter pylori SJM180BEpsilonproteobacteria158115241469136192.92%86.08%96.39%94.65%91.24%
Helicobacter pylori Sat464BEpsilonproteobacteria150814641412131593.63%87.20%96.45%95.04%91.82%
Helicobacter pylori Shi470BEpsilonproteobacteria38.9156915181441131891.84%84.00%94.93%93.38%89.47%
Helicobacter pylori SouthAfrica7BEpsilonproteobacteria157215731483139694.34%88.80%94.28%94.31%91.54%
Helicobacter pylori v225dBEpsilonproteobacteria154915101421126591.74%81.67%94.11%92.92%87.89%
Heliobacterium modesticaldum Ice1BFirmicutes57.0300027492647216188.23%72.03%96.29%92.26%84.16%
Herbaspirillum seropedicae SmR1BBetaproteobacteria473847624532385595.65%81.36%95.17%95.41%88.27%
Herminiimonas arsenicoxydansBBetaproteobacteria54.3329432623165266396.08%80.84%97.03%96.56%88.94%
Herpetosiphon aurantiacus ATCC 23779BChloroflexi50.9527856175242481499.32%91.21%93.32%96.32%92.27%
Hirschia baltica ATCC 49814BAlphaproteobacteria45.2318632133170303799.50%95.32%98.66%99.08%96.99%
Hydrogenobacter thermophilus TK-6BAquificae44.0189419051865173798.47%91.71%97.90%98.18%94.81%
Hydrogenobacter thermophilus TK-6BAquificae43.5-43.9186819021864183999.79%98.45%98.00%98.89%98.22%
Hydrogenobaculum sp. Y04AAS1BAquificae34.8162916351622157799.57%96.81%99.20%99.39%98.01%
Hyperthermus butylicus DSM 5456ACrenarchaeota53.7160218281594125199.50%78.09%87.20%93.35%82.64%
Hyphomicrobium denitrificans ATCC 51888BAlphaproteobacteria60.8351035493501342699.74%97.61%98.65%99.20%98.13%
Hyphomonas neptunium ATCC 15444BAlphaproteobacteria61.9350435033405281297.17%80.25%97.20%97.19%88.73%
Idiomarina loihiensis L2TRBGammaproteobacteria47.0262926582615244799.47%93.08%98.38%98.92%95.73%
Ignicoccus hospitalis KIN4/IACrenarchaeota56.5143414891427116999.51%81.52%95.84%97.67%88.68%
Ignisphaera aggregans DSM 17230ACrenarchaeota52.9192719991909176699.07%91.65%95.50%97.28%93.57%
Ilyobacter polytropus DSM 2926BFusobacteria286929492864283099.83%98.64%97.12%98.47%97.88%
Intrasporangium calvum DSM 43043BActinobacteria356336553559344799.89%96.74%97.37%98.63%97.06%
Isosphaera pallida ATCC 43644BPlanctomycetes62.2372237923717365099.87%98.07%98.02%98.94%98.04%
Jannaschia sp. CCS1BAlphaproteobacteria62.2428343584215364398.41%85.06%96.72%97.57%90.89%
Janthinobacterium sp. MarseilleBBetaproteobacteria54.2369638473657313698.94%84.85%95.06%97.00%89.95%
Jonesia denitrificans DSM 20603BActinobacteria58.4251125652490233099.16%92.79%97.08%98.12%94.93%
Kangiella koreensis DSM 16069BGammaproteobacteria43.7263126382614252299.35%95.86%99.09%99.22%97.47%
Ketogulonicigenium vulgare Y25BAlphaproteobacteria321333023092265296.23%82.54%93.64%94.94%88.09%
Kineococcus radiotolerans SRS30216BActinobacteria74.2468247084542358097.01%76.46%96.47%96.74%86.47%
Klebsiella pneumoniae 342BGammaproteobacteria56.9576855145358489692.89%84.88%97.17%95.03%91.03%
Klebsiella pneumoniae subsp. pneumoniae MGH 78578BGammaproteobacteria57.1518652945044409997.26%79.04%95.28%96.27%87.16%
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044BGammaproteobacteria57.4528850224960393993.80%74.49%98.77%96.28%86.63%
Klebsiella variicola At-22BGammaproteobacteria57.6505750445012491799.11%97.23%99.37%99.24%98.30%
Kocuria rhizophila DC2201BActinobacteria71.2235623142298176397.54%74.83%99.31%98.42%87.07%
Kosmotoga olearia TBF 19.5.1BThermotogae41.5211821662090202698.68%95.66%96.49%97.58%96.07%
Kribbella flavida DSM 17836BActinobacteria70.6694270656919650199.67%93.65%97.93%98.80%95.79%
Kytococcus sedentarius DSM 20547BActinobacteria71.6255426242511210898.32%82.54%95.69%97.00%89.12%
Lactobacillus acidophilus NCFMBFirmicutes34.7186218811811166097.26%89.15%96.28%96.77%92.72%
Lactobacillus amylovorus GRL 1112BFirmicutes205421001992187996.98%91.48%94.86%95.92%93.17%
Lactobacillus brevis ATCC 367BFirmicutes46.1221822832185205698.51%92.70%95.71%97.11%94.20%
Lactobacillus casei ATCC 334BFirmicutes46.6277128492666249196.21%89.90%93.58%94.89%91.74%
Lactobacillus casei BL23BFirmicutes46.3304430102927263096.16%86.40%97.24%96.70%91.82%
Lactobacillus casei str. ZhangBFirmicutes40.1284827182622245992.06%86.34%96.47%94.27%91.40%
Lactobacillus crispatus ST1BFirmicutes202419901951183096.39%90.42%98.04%97.22%94.23%
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842BFirmicutes49.7209619161870164689.22%78.53%97.60%93.41%88.06%
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365BFirmicutes49.7172119201594142992.62%83.03%83.02%87.82%83.03%
Lactobacillus delbrueckii subsp. bulgaricus ND02BFirmicutes201820491885166893.41%82.66%92.00%92.70%87.33%
Lactobacillus fermentum CECT 5716BFirmicutes10512342104789199.62%84.78%44.71%72.16%64.74%
Lactobacillus fermentum IFO 3956BFirmicutes51.5184320941817152298.59%82.58%86.77%92.68%84.68%
Lactobacillus gasseri ATCC 33323BFirmicutes35.3175518081721128598.06%73.22%95.19%96.63%84.20%
Lactobacillus helveticus DPC 4571BFirmicutes37.1161022091601140099.44%86.96%72.48%85.96%79.72%
Lactobacillus helveticus H10BFirmicutes197822771903127496.21%64.41%83.57%89.89%73.99%
Lactobacillus johnsonii FI9785BFirmicutes34.4173717451701160497.93%92.34%97.48%97.70%94.91%
Lactobacillus johnsonii NCC 533BFirmicutes34.6182118881812169199.51%92.86%95.97%97.74%94.42%
Lactobacillus plantarum JDM1BFirmicutes44.7294829852889249198.00%84.50%96.78%97.39%90.64%
Lactobacillus plantarum WCFS1BFirmicutes44.44643393584.78%76.09%90.70%87.74%83.39%
Lactobacillus plantarum subsp. plantarum ST-IIIBFirmicutes303830872917246196.02%81.01%94.49%95.26%87.75%
Lactobacillus reuteri DSM 20016BFirmicutes38.9190019831885177599.21%93.42%95.06%97.13%94.24%
Lactobacillus reuteri JCM 1112BFirmicutes38.9182020261815154499.73%84.84%89.59%94.66%87.21%
Lactobacillus rhamnosus GGBFirmicutes46.7294528322744248393.17%84.31%96.89%95.03%90.60%
Lactobacillus rhamnosus GGBFirmicutes46.7283528262710245195.59%86.46%95.90%95.74%91.18%
Lactobacillus rhamnosus Lc 705BFirmicutes46.7299328742799254893.52%85.13%97.39%95.45%91.26%
Lactobacillus sakei subsp. sakei 23KBFirmicutes41.3188518511835168797.35%89.50%99.14%98.24%94.32%
Lactobacillus salivarius CECT 5713BFirmicutes155221881546141199.61%90.91%70.66%85.14%80.79%
Lactobacillus salivarius UCC118BFirmicutes33.0201321071965183197.62%90.96%93.26%95.44%92.11%
Lactococcus lactis subsp. cremoris MG1363BFirmicutes35.7251625802450223197.38%88.67%94.96%96.17%91.82%
Lactococcus lactis subsp. cremoris NZ9000BFirmicutes35.8251125772437228797.05%91.08%94.57%95.81%92.82%
Lactococcus lactis subsp. cremoris SK11BFirmicutes35.8250527172433226197.13%90.26%89.55%93.34%89.90%
Lactococcus lactis subsp. lactis Il1403BFirmicutes35.3226623832233202398.54%89.28%93.71%96.12%91.49%
Lactococcus lactis subsp. lactis KF147BFirmicutes34.9257625522510232597.44%90.26%98.35%97.90%94.31%
Laribacter hongkongensis HLHK9BBetaproteobacteria62.4323930032895254889.38%78.67%96.40%92.89%87.53%
Lawsonia intracellularis PHE/MN1-00BDeltaproteobacteria33.1132814421314114698.95%86.30%91.12%95.03%88.71%
Leadbetterella byssophila DSM 17132BBacteroidetes/Chlorobi345336553447338099.83%97.89%94.31%97.07%96.10%
Legionella longbeachae NSW150BGammaproteobacteria37.1366935493481306794.88%83.59%98.08%96.48%90.84%
Legionella pneumophila 130bBGammaproteobacteria327432423077264893.98%80.88%94.91%94.45%87.90%
Legionella pneumophila 2300/99 AlcoyBGammaproteobacteria319131293073273796.30%85.77%98.21%97.26%91.99%
Legionella pneumophila str. CorbyBGammaproteobacteria38.5320431953111287697.10%89.76%97.37%97.23%93.57%
Legionella pneumophila str. LensBGammaproteobacteria38.4300430152953264298.30%87.95%97.94%98.12%92.95%
Legionella pneumophila str. ParisBGammaproteobacteria38.3322432473180284498.64%88.21%97.94%98.29%93.07%
Legionella pneumophila subsp. pneumophila str. Philadelphia 1BGammaproteobacteria38.3294230242876200197.76%68.01%95.11%96.43%81.56%
Leifsonia xyli subsp. xyli str. CTCB07BActinobacteria67.7203027651987130997.88%64.48%71.86%84.87%68.17%
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'BSpirochaetes38.9360137013583312899.50%86.86%96.81%98.16%91.84%
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'BSpirochaetes38.9372736923643292297.75%78.40%98.67%98.21%88.54%
Leptospira borgpetersenii serovar Hardjo-bovis JB197BSpirochaetes40.2288035432861250199.34%86.84%80.75%90.05%83.80%
Leptospira borgpetersenii serovar Hardjo-bovis L550BSpirochaetes40.2294536122922257899.22%87.54%80.90%90.06%84.22%
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130BSpirochaetes35.0365836853461271394.61%74.17%93.92%94.27%84.04%
Leptospira interrogans serovar Lai str. 56601BSpirochaetes35.0370637853606305797.30%82.49%95.27%96.29%88.88%
Leptothrix cholodnii SP-6BBetaproteobacteria68.9436343664334416199.34%95.37%99.27%99.30%97.32%
Leptotrichia buccalis C-1013-bBFusobacteria29.6221122992198215699.41%97.51%95.61%97.51%96.56%
Leuconostoc citreum KM20BFirmicutes38.9182018551797166398.74%91.37%96.87%97.80%94.12%
Leuconostoc gasicomitatum LMG 18811BFirmicutes191319111865174897.49%91.37%97.59%97.54%94.48%
Leuconostoc kimchii IMSNU 11154BFirmicutes37212820892070195397.27%91.78%99.09%98.18%95.43%
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293BFirmicutes37.7200520321983188598.90%94.01%97.59%98.25%95.80%
Listeria innocua Clip11262BFirmicutes37.48086796498.75%80.00%91.86%95.31%85.93%
Listeria monocytogenesBFirmicutes37.9308830793033283698.22%91.84%98.51%98.36%95.17%
Listeria monocytogenes 08-5923BFirmicutes38.0296629592919273898.42%92.31%98.65%98.53%95.48%
Listeria monocytogenes HCC23BFirmicutes38.2297429612920274298.18%92.20%98.62%98.40%95.41%
Listeria monocytogenes serotype 4a str. L99BFirmicutes292529542899273299.11%93.40%98.14%98.62%95.77%
Listeria monocytogenes serotype 4b str. CLIP 80459BFirmicutes38.1278828022767261999.25%93.94%98.75%99.00%96.34%
Listeria monocytogenes serotype 4b str. F2365BFirmicutes38.0282028082756255697.73%90.64%98.15%97.94%94.39%
Listeria seeligeri serovar 1/2b str. SLCC3954BFirmicutes37.4272226882673251998.20%92.54%99.44%98.82%95.99%
Listeria welshimeri serovar 6b str. SLCC5334BFirmicutes36.4278027812736259798.42%93.42%98.38%98.40%95.90%
Lysinibacillus sphaericus C3-41BFirmicutes37.1477148354511310294.55%65.02%93.30%93.92%79.16%
Macrococcus caseolyticus JCSC5402BFirmicutes36.6206123522050175499.47%85.10%87.16%93.31%86.13%
Magnetococcus sp. MC-1BOther Bacteria54.2371739243643316998.01%85.26%92.84%95.42%89.05%
Magnetospirillum magneticum AMB-1BAlphaproteobacteria65.1455946284337312895.13%68.61%93.71%94.42%81.16%
Mannheimia succiniciproducens MBEL55EBGammaproteobacteria42.5238521202100156888.05%65.74%99.06%93.55%82.40%
Maribacter sp. HTCC2170BBacteroidetes/Chlorobi37.0341234093317283297.22%83.00%97.30%97.26%90.15%
Maricaulis maris MCS10BAlphaproteobacteria62.7306431313044267399.35%87.24%97.22%98.28%92.23%
Marinobacter aquaeolei VT8BGammaproteobacteria56.9427244574236376699.16%88.16%95.04%97.10%91.60%
Marinomonas sp. MWYL1BGammaproteobacteria42.6444045504410407399.32%91.73%96.92%98.12%94.33%
Marivirga tractuosa DSM 4126BBacteroidetes/Chlorobi375638103748367199.79%97.74%98.37%99.08%98.05%
Megamonas hypermegaleBFirmicutes211828041999176594.38%83.33%71.29%82.84%77.31%
Meiothermus ruber DSM 1279BDeinococcus-Thermus63.4301330753003286599.67%95.09%97.66%98.66%96.37%
Meiothermus silvanus DSM 9946BDeinococcus-Thermus62.7346937133460337299.74%97.20%93.19%96.46%95.19%
Mesoplasma florum L1BFirmicutes27.068368668064499.56%94.29%99.13%99.34%96.71%
Mesorhizobium ciceri biovar biserrulae WSM1271BAlphaproteobacteria626464066237605699.57%96.68%97.36%98.47%97.02%
Mesorhizobium loti MAFF303099BAlphaproteobacteria62.5728173776904489894.82%67.27%93.59%94.21%80.43%
Metallosphaera sedula DSM 5348ACrenarchaeota46.2225623912242191099.38%84.66%93.77%96.57%89.22%
Methanobrevibacter ruminantium M1AEuryarchaeota32.6221722002178195498.24%88.14%99.00%98.62%93.57%
Methanobrevibacter smithii ATCC 35061AEuryarchaeota31.0179717821760161797.94%89.98%98.77%98.35%94.37%
Methanocaldococcus fervens AG86AEuryarchaeota32.2158016401569148299.30%93.80%95.67%97.49%94.73%
Methanocaldococcus infernus MEAEuryarchaeota33.5144114741432139799.38%96.95%97.15%98.26%97.05%
Methanocaldococcus jannaschii DSM 2661AEuryarchaeota31.3177018771759120199.38%67.85%93.71%96.55%80.78%
Methanocaldococcus sp. FS406-22AEuryarchaeota32.0181618751811176799.72%97.30%96.59%98.16%96.94%
Methanocaldococcus vulcanius M7AEuryarchaeota31.6174217611722163698.85%93.92%97.79%98.32%95.85%
Methanocella paludicola SANAEAEuryarchaeota54.9300530552970243098.84%80.87%97.22%98.03%89.04%
Methanococcoides burtonii DSM 6242AEuryarchaeota40.8227226162245197498.81%86.88%85.82%92.31%86.35%
Methanococcus aeolicus Nankai-3AEuryarchaeota30.0149015251483132599.53%88.93%97.25%98.39%93.09%
Methanococcus maripaludis C5AEuryarchaeota33.0182218881818161099.78%88.36%96.29%98.04%92.33%
Methanococcus maripaludis C6AEuryarchaeota33.4182618691815164499.40%90.03%97.11%98.25%93.57%
Methanococcus maripaludis C7AEuryarchaeota33.3178918331779158599.44%88.60%97.05%98.25%92.83%
Methanococcus maripaludis S2AEuryarchaeota33.1172317491715151199.54%87.70%98.06%98.80%92.88%
Methanococcus vannielii SBAEuryarchaeota31.3167817461673149099.70%88.80%95.82%97.76%92.31%
Methanococcus voltae A3AEuryarchaeota28.6171717271713162599.77%94.64%99.19%99.48%96.92%
Methanocorpusculum labreanum ZAEuryarchaeota50.0174018161723154299.02%88.62%94.88%96.95%91.75%
Methanoculleus marisnigri JR1AEuryarchaeota62.1248924812416208697.07%83.81%97.38%97.22%90.59%
Methanohalobium evestigatum Z-7303AEuryarchaeota225424032245219099.60%97.16%93.42%96.51%95.29%
Methanohalophilus mahii DSM 5219AEuryarchaeota42.6198820121961186998.64%94.01%97.47%98.05%95.74%
Methanoplanus petrolearius DSM 11571AEuryarchaeota50278528212780274799.82%98.64%98.55%99.18%98.59%
Methanopyrus kandleri AV19AEuryarchaeota61.2167818141654121698.57%72.47%91.18%94.87%81.82%
Methanoregula boonei 6A8AEuryarchaeota54.5245025282395209497.76%85.47%94.74%96.25%90.10%
Methanosaeta thermophila PTAEuryarchaeota53.5169618101688133599.53%78.71%93.26%96.39%85.99%
Methanosarcina acetivorans C2AAEuryarchaeota42.7454148844257296293.75%65.23%87.16%90.45%76.20%
Methanosarcina barkeri str. FusaroAEuryarchaeota39.2362540373560317498.21%87.56%88.18%93.20%87.87%
Methanosarcina mazei Go1AEuryarchaeota41.5337134773264240396.83%71.28%93.87%95.35%82.58%
Methanosphaera stadtmanae DSM 3091AEuryarchaeota27.6153415521518137998.96%89.90%97.81%98.38%93.85%
Methanosphaerula palustris E1-9cAEuryarchaeota55.4265527782594243197.70%91.56%93.38%95.54%92.47%
Methanospirillum hungatei JF-1AEuryarchaeota45.1314034153094272698.54%86.82%90.60%94.57%88.71%
Methanothermobacter marburgensis str. MarburgAEuryarchaeota175817491729149598.35%85.04%98.86%98.60%91.95%
Methanothermobacter thermautotrophicus str. Delta HAEuryarchaeota49.5187018761822118997.43%63.58%97.12%97.28%80.35%
Methanothermus fervidus DSM 2088AEuryarchaeota1283131812831258100.00%98.05%97.34%98.67%97.70%
Methylacidiphilum infernorum V4BOther Bacteria45.5247221091987133680.38%54.05%94.22%87.30%74.13%
Methylibium petroleiphilum PM1BBetaproteobacteria68.8444945074325370397.21%83.23%95.96%96.59%89.60%
Methylobacillus flagellatus KTBBetaproteobacteria55.7275328442711236298.47%85.80%95.32%96.90%90.56%
Methylobacterium chloromethanicum CM4BAlphaproteobacteria68.1550657005445518598.89%94.17%95.53%97.21%94.85%
Methylobacterium extorquens AM1BAlphaproteobacteria68.5623464865909494794.79%79.36%91.10%92.95%85.23%
Methylobacterium extorquens DM4BAlphaproteobacteria68.0594757645570454393.66%76.39%96.63%95.15%86.51%
Methylobacterium extorquens PA1BAlphaproteobacteria68.2482949824742401698.20%83.16%95.18%96.69%89.17%
Methylobacterium nodulans ORS 2060BAlphaproteobacteria68.4831186348168783298.28%94.24%94.60%96.44%94.42%
Methylobacterium populi BJ001BAlphaproteobacteria69.4535654465304509499.03%95.11%97.39%98.21%96.25%
Methylobacterium radiotolerans JCM 2831BAlphaproteobacteria71.0642865056361610198.96%94.91%97.79%98.37%96.35%
Methylobacterium sp. 4-46BAlphaproteobacteria71.5669269946532591297.61%88.34%93.39%95.50%90.87%
Methylocella silvestris BL2BAlphaproteobacteria63.1381739143794361099.40%94.58%96.93%98.17%95.76%
Methylococcus capsulatus str. BathBGammaproteobacteria63.6295930462823220495.40%74.48%92.68%94.04%83.58%
Methylotenera mobilis JLW8BBetaproteobacteria45.5233723442314219899.02%94.05%98.72%98.87%96.39%
Methylotenera sp. 301BBetaproteobacteria276428002756268399.71%97.07%98.43%99.07%97.75%
Methylovorus sp. MP688BBetaproteobacteria271326822599210895.80%77.70%96.91%96.35%87.30%
Methylovorus sp. SIP3-4BBetaproteobacteria54.6291029152880272398.97%93.57%98.80%98.88%96.19%
Micrococcus luteus NCTC 2665BActinobacteria73.0223622882217194899.15%87.12%96.90%98.02%92.01%
Microcystis aeruginosa NIES-843BCyanobacteria42.3631256055217438982.65%69.53%93.08%87.86%81.31%
Micromonospora aurantiaca ATCC 27029BActinobacteria72.9622462976209605699.76%97.30%98.60%99.18%97.95%
Micromonospora sp. L5BActinobacteria72.9615162536144602199.89%97.89%98.26%99.07%98.07%
Mobiluncus curtisii ATCC 43063BActinobacteria55.6191018421807136394.61%71.36%98.10%96.35%84.73%
Moorella thermoacetica ATCC 39073BFirmicutes55.8246326402435212798.86%86.36%92.23%95.55%89.30%
Moraxella catarrhalis RH4BGammaproteobacteria188516791607137685.25%73.00%95.71%90.48%84.35%
Mycobacterium abscessus ATCC 19977BActinobacteria64.1494449934887395598.85%80.00%97.88%98.36%88.94%
Mycobacterium avium 104BActinobacteria69.0512051914946371996.60%72.64%95.28%95.94%83.96%
Mycobacterium avium subsp. paratuberculosis K-10BActinobacteria69.3435145444250294497.68%67.66%93.53%95.60%80.60%
Mycobacterium bovis BCG str. Pasteur 1173P2BActinobacteria65.6398940263822292695.81%73.35%94.93%95.37%84.14%
Mycobacterium bovis BCG str. Tokyo 172BActinobacteria65.6398640363822292595.89%73.38%94.70%95.29%84.04%
Mycobacterium gilvum PYR-GCKBActinobacteria67.7557957275503441298.64%79.08%96.09%97.36%87.59%
Mycobacterium leprae Br4923BActinobacteria57.8271839861559110357.36%40.58%39.11%48.24%39.85%
Mycobacterium marinum MBActinobacteria65.7545856055342434497.87%79.59%95.31%96.59%87.45%
Mycobacterium smegmatis str. MC2 155BActinobacteria67.4671666906410498695.44%74.24%95.81%95.63%85.03%
Mycobacterium sp. JLSBActinobacteria68.4573958335684472299.04%82.28%97.45%98.24%89.86%
Mycobacterium sp. KMSBActinobacteria68.2597560735885486898.49%81.47%96.90%97.70%89.19%
Mycobacterium sp. MCSBActinobacteria68.4561557205531447298.50%79.64%96.70%97.60%88.17%
Mycobacterium sp. Spyr1BActinobacteria535055325315487699.35%91.14%96.08%97.71%93.61%
Mycobacterium tuberculosis CDC1551BActinobacteria65.6418940793798260990.67%62.28%93.11%91.89%77.70%
Mycobacterium tuberculosis F11BActinobacteria65.6394340853839295397.36%74.89%93.98%95.67%84.44%
Mycobacterium tuberculosis H37RaBActinobacteria65.6403440943898298296.63%73.92%95.21%95.92%84.57%
Mycobacterium tuberculosis KZN 1435BActinobacteria65.6406040793898292896.01%72.12%95.56%95.79%83.84%
Mycobacterium ulcerans Agy99BActinobacteria65.4424555624143294497.60%69.35%74.49%86.04%71.92%
Mycobacterium vanbaalenii PYR-1BActinobacteria67.8597961705911483798.86%80.90%95.80%97.33%88.35%
Mycoplasma agalactiae PG2BFirmicutes29.775977774066897.50%88.01%95.24%96.37%91.62%
Mycoplasma arthritidis 158L3-1BFirmicutes30.763163461758697.78%92.87%97.32%97.55%95.09%
Mycoplasma bovis PG45BFirmicutes76583775070598.04%92.16%89.61%93.82%90.88%
Mycoplasma capricolum subsp. capricolum ATCC 27343BFirmicutes23.881284180775799.38%93.23%95.96%97.67%94.59%
Mycoplasma conjunctivae HRC/581BOther Bacteria28.669667366156194.97%80.60%98.22%96.59%89.41%
Mycoplasma crocodyli MP145BFirmicutes27.068975767964298.55%93.18%89.70%94.12%91.44%
Mycoplasma fermentans JERBOther Bacteria79783777868297.62%85.57%92.95%95.28%89.26%
Mycoplasma fermentans M64BOther Bacteria105098896389891.71%85.52%97.47%94.59%91.50%
Mycoplasma fermentans PG18BOther Bacteria89389986328796.64%32.14%96.00%96.32%64.07%
Mycoplasma gallisepticum str. FBOther Bacteria31.475678273862297.62%82.28%94.37%96.00%88.32%
Mycoplasma gallisepticum str. R(high)BOther Bacteria31.576680875264698.17%84.33%93.07%95.62%88.70%
Mycoplasma gallisepticum str. R(low)BOther Bacteria31.576380774964298.17%84.14%92.81%95.49%88.48%
Mycoplasma genitalium G37BFirmicutes31.747652647343799.37%91.81%89.92%94.65%90.87%
Mycoplasma haemofelis str. Langford 1BOther Bacteria154615691530143698.97%92.88%97.51%98.24%95.20%
Mycoplasma hyopneumoniae 168BOther Bacteria69570766546695.68%67.05%94.06%94.87%80.55%
Mycoplasma hyopneumoniae 232BFirmicutes28.669168166657296.38%82.78%97.80%97.09%90.29%
Mycoplasma hyopneumoniae 7448BFirmicutes28.569869365757294.13%81.95%94.81%94.47%88.38%
Mycoplasma hyopneumoniae JBFirmicutes28.567469565859097.63%87.54%94.68%96.15%91.11%
Mycoplasma hyorhinis HUB-1BOther Bacteria65776064857098.63%86.76%85.26%91.95%86.01%
Mycoplasma leachii PG50BOther Bacteria88488686883598.19%94.46%97.97%98.08%96.21%
Mycoplasma mobile 163KBFirmicutes25.063566063256299.53%88.50%95.76%97.64%92.13%
Mycoplasma mycoides subsp. capri str. GM12BFirmicutes23.983288182779399.40%95.31%93.87%96.63%94.59%
Mycoplasma mycoides subsp. capri str. GM12BFirmicutes23.983087682479199.28%95.30%94.06%96.67%94.68%
Mycoplasma mycoides subsp. mycoides SC str. GladysdaleBOther Bacteria109510981075100598.17%91.78%97.91%98.04%94.84%
Mycoplasma mycoides subsp. mycoides SC str. PG1BFirmicutes24.01016114999085497.44%84.06%86.16%91.80%85.11%
Mycoplasma penetrans HF-2BFirmicutes25.710371040102284198.55%81.10%98.27%98.41%89.68%
Mycoplasma pneumoniae FHBOther Bacteria62976860853096.66%84.26%79.17%87.91%81.71%
Mycoplasma pneumoniae M129BFirmicutes40.068876466757296.95%83.14%87.30%92.13%85.22%
Mycoplasma suis str. IllinoisBOther Bacteria844173280673195.50%86.61%46.54%71.02%66.57%
Mycoplasma synoviae 53BFirmicutes28.568171066358297.36%85.46%93.38%95.37%89.42%
Myxococcus xanthus DK 1622BDeltaproteobacteria68.9733173337029447695.88%61.06%95.85%95.87%78.46%
Nakamurella multipartita DSM 44233BActinobacteria70.9524154655209490499.39%93.57%95.32%97.35%94.44%
Nanoarchaeum equitans Kin4-MANanoarchaeota31.653558353245599.44%85.05%91.25%95.35%88.15%
Natranaerobius thermophilus JW/NM-WN-LFBFirmicutes36.3290629812891279699.48%96.21%96.98%98.23%96.60%
Natrialba magadii ATCC 43099AEuryarchaeota61.1420843174196410699.71%97.58%97.20%98.46%97.39%
Natronomonas pharaonis DSM 2160AEuryarchaeota63.1284428502797254198.35%89.35%98.14%98.24%93.74%
Nautilia profundicola AmHBEpsilonproteobacteria33.5173117371711164098.84%94.74%98.50%98.67%96.62%
Neisseria gonorrhoeae FA 1090BBetaproteobacteria52.7200321421818154090.76%76.88%84.87%87.82%80.88%
Neisseria gonorrhoeae NCCP11945BBetaproteobacteria52.4267522582116150679.10%56.30%93.71%86.41%75.01%
Neisseria gonorrhoeae TCDC-NG08107BBetaproteobacteria215221391920134389.22%62.41%89.76%89.49%76.08%
Neisseria lactamica 020-06BBetaproteobacteria199820351918164796.00%82.43%94.25%95.12%88.34%
Neisseria meningitidis 053442BBetaproteobacteria51.7202120001849133991.49%66.25%92.45%91.97%79.35%
Neisseria meningitidis 8013BBetaproteobacteria51.4212721251968172592.52%81.10%92.61%92.57%86.86%
Neisseria meningitidis FAM18BBetaproteobacteria51.6191620591848145596.45%75.94%89.75%93.10%82.85%
Neisseria meningitidis MC58BBetaproteobacteria51.5206421071887164691.42%79.75%89.56%90.49%84.65%
Neisseria meningitidis Z2491BBetaproteobacteria51.8195820581862159195.10%81.26%90.48%92.79%85.87%
Neisseria meningitidis alpha14BBetaproteobacteria51.9192519841802155693.61%80.83%90.83%92.22%85.83%
Neisseria meningitidis alpha710BBetaproteobacteria206420831922164593.12%79.70%92.27%92.70%85.99%
Neorickettsia risticii str. IllinoisBAlphaproteobacteria41.389881278961487.86%68.37%97.17%92.51%82.77%
Neorickettsia sennetsu str. MiyayamaBAlphaproteobacteria41.193178975156780.67%60.90%95.18%87.92%78.04%
Nitratifractor salsuginis DSM 16511BEpsilonproteobacteria207821092062203199.23%97.74%97.77%98.50%97.75%
Nitratiruptor sp. SB155-2BEpsilonproteobacteria39.7185919331841174499.03%93.81%95.24%97.14%94.53%
Nitrobacter hamburgensis X14BAlphaproteobacteria61.6432648874149348795.91%80.61%84.90%90.40%82.75%
Nitrobacter winogradskyi Nb-255BAlphaproteobacteria62.0312432623026253596.86%81.15%92.77%94.81%86.96%
Nitrosococcus halophilus Nc4BGammaproteobacteria51.6380239923731355698.13%93.53%93.46%95.80%93.50%
Nitrosococcus oceani ATCC 19707BGammaproteobacteria50.3301933192984260598.84%86.29%89.91%94.37%88.10%
Nitrosococcus watsoni C-113BGammaproteobacteria290831672898282499.66%97.11%91.51%95.58%94.31%
Nitrosomonas europaea ATCC 19718BBetaproteobacteria50.7257526702524216398.02%84.00%94.53%96.28%89.27%
Nitrosomonas eutropha C91BBetaproteobacteria48.5255127172481217797.26%85.34%91.31%94.28%88.33%
Nitrosopumilus maritimus SCM1ACrenarchaeota34.2179519471789161299.67%89.81%91.88%95.78%90.84%
Nitrosospira multiformis ATCC 25196BBetaproteobacteria53.9280629862754234998.15%83.71%92.23%95.19%87.97%
Nocardia farcinica IFM 10152BActinobacteria70.7594759775810443897.70%74.63%97.21%97.45%85.92%
Nocardioides sp. JS614BActinobacteria71.4491050854864411699.06%83.83%95.65%97.36%89.74%
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111BActinobacteria72.7549755595493532599.93%96.87%98.81%99.37%97.84%
Nostoc punctiforme PCC 73102BCyanobacteria41.4665477526588609099.01%91.52%84.98%92.00%88.25%
Nostoc sp. PCC 7120BCyanobacteria41.3612561575923497696.70%81.24%96.20%96.45%88.72%
Novosphingobium aromaticivorans DSM 12444BAlphaproteobacteria65.1393640013866334598.22%84.98%96.63%97.42%90.81%
Oceanithermus profundus DSM 14977BDeinococcus-Thermus237223842366232699.75%98.06%99.24%99.50%98.65%
Oceanobacillus iheyensis HTE831BFirmicutes35.7349735553453320398.74%91.59%97.13%97.94%94.36%
Ochrobactrum anthropi ATCC 49188BAlphaproteobacteria56.1478150114713417798.58%87.37%94.05%96.32%90.71%
Odoribacter splanchnicus DSM 20712BBacteroidetes/Chlorobi349837103490344399.77%98.43%94.07%96.92%96.25%
Oenococcus oeni PSU-1BFirmicutes37.9169118371630147996.39%87.46%88.73%92.56%88.10%
Oligotropha carboxidovorans OM5BAlphaproteobacteria62.4372335793455282792.80%75.93%96.54%94.67%86.23%
Olsenella uli DSM 7084BActinobacteria173917751736169799.83%97.58%97.80%98.82%97.69%
Onion yellows phytoplasma OY-MBFirmicutes27.875295673961998.27%82.31%77.30%87.79%79.81%
Opitutus terrae PB90-1BOther Bacteria65.3461346734583421199.35%91.29%98.07%98.71%94.68%
Orientia tsutsugamushi str. BoryongBAlphaproteobacteria30.5217924471377104663.19%48.00%56.27%59.73%52.14%
Orientia tsutsugamushi str. IkedaBAlphaproteobacteria30.5196721881911165097.15%83.88%87.34%92.25%85.61%
Paenibacillus polymyxa E681BFirmicutes480648494620408496.13%84.98%95.28%95.70%90.13%
Paenibacillus polymyxa SC2BFirmicutes603357415476485990.77%80.54%95.38%93.08%87.96%
Paenibacillus sp. JDR-2BFirmicutes50.3621262956171598399.34%96.31%98.03%98.69%97.17%
Paenibacillus sp. Y412MC10BFirmicutes51.2623963076176593698.99%95.14%97.92%98.46%96.53%
Paludibacter propionicigenes WB4BBacteroidetes/Chlorobi39.3302030713009293699.64%97.22%97.98%98.81%97.60%
Pantoea ananatis LMG 20103BGammaproteobacteria53.7423942604129263397.41%62.11%96.92%97.16%79.52%
Pantoea sp. At-9bBGammaproteobacteria54.3577058995754568599.72%98.53%97.54%98.63%98.03%
Pantoea stewartii subsp. stewartii DC283BGammaproteobacteria3438311791.18%50.00%81.58%86.38%65.79%
Pantoea vagans C9-1BGammaproteobacteria459244994278381293.16%83.01%95.09%94.12%89.05%
Parabacteroides distasonis ATCC 8503BBacteroidetes/Chlorobi45.1385140023745331097.25%85.95%93.58%95.41%89.76%
Paracoccus denitrificans PD1222BAlphaproteobacteria66.8507751174886428296.24%84.34%95.49%95.86%89.91%
Parvibaculum lavamentivorans DS-1BAlphaproteobacteria62.3363637033611315999.31%86.88%97.52%98.41%92.20%
Parvularcula bermudensis HTCC2503BAlphaproteobacteria60.7268826832621222097.51%82.59%97.69%97.60%90.14%
Pasteurella multocida subsp. multocida str. Pm70BGammaproteobacteria40.4201520321992177598.86%88.09%98.03%98.45%93.06%
Pectobacterium atrosepticum SCRI1043BGammaproteobacteria51.0444344674302381996.83%85.96%96.31%96.57%91.13%
Pectobacterium carotovorum subsp. carotovorum PC1BGammaproteobacteria51.9424642824217409399.32%96.40%98.48%98.90%97.44%
Pectobacterium wasabiae WPP163BGammaproteobacteria50.5443745174397422999.10%95.31%97.34%98.22%96.33%
Pediococcus pentosaceus ATCC 25745BFirmicutes37.4175517521725166398.29%94.76%98.46%98.37%96.61%
Pedobacter heparinus DSM 2366BBacteroidetes/Chlorobi42.0425142724213374299.11%88.03%98.62%98.86%93.32%
Pelobacter carbinolicus DSM 2380BDeltaproteobacteria55.1335532423131285393.32%85.04%96.58%94.95%90.81%
Pelobacter propionicus DSM 2379BDeltaproteobacteria58.5380538133637320995.58%84.34%95.38%95.48%89.86%
Pelodictyon phaeoclathratiforme BU-1BBacteroidetes/Chlorobi48.1269929232662232398.63%86.07%91.07%94.85%88.57%
Pelotomaculum thermopropionicum SIBFirmicutes53.0292030012804243596.03%83.39%93.44%94.73%88.41%
Persephonella marina EX-H1BAquificae37.1205120542023191198.63%93.17%98.49%98.56%95.83%
Petrotoga mobilis SJ95BThermotogae34.1189719861886175699.42%92.57%94.96%97.19%93.77%
Phenylobacterium zucineum HLK1BAlphaproteobacteria71.1385442733808304498.81%78.98%89.12%93.96%84.05%
Photobacterium profundum SS9BGammaproteobacteria41.76770573685.07%53.73%81.43%83.25%67.58%
Photorhabdus asymbioticaBGammaproteobacteria42.1438344114117343993.93%78.46%93.33%93.63%85.90%
Picrophilus torridus DSM 9790AEuryarchaeota36.0153515921530134199.67%87.36%96.11%97.89%91.73%
Pirellula staleyi DSM 6068BPlanctomycetes57.5471847184627437998.07%92.81%98.07%98.07%95.44%
Planctomyces limnophilus DSM 3776BPlanctomycetes53.7425842874168391997.89%92.04%97.22%97.56%94.63%
Polaromonas naphthalenivorans CJ2BBetaproteobacteria61.7492850224768408496.75%82.87%94.94%95.85%88.91%
Polaromonas sp. JS666BBetaproteobacteria62.0545356605306451497.30%82.78%93.75%95.52%88.26%
Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1BBetaproteobacteria44.8207921352069188299.52%90.52%96.91%98.21%93.72%
Polynucleobacter necessarius subsp. necessarius STIR1BBetaproteobacteria45.6150919171469137197.35%90.85%76.63%86.99%83.74%
Porphyromonas gingivalis ATCC 33277BBacteroidetes/Chlorobi48.4209019801850153488.52%73.40%93.43%90.98%83.42%
Porphyromonas gingivalis W83BBacteroidetes/Chlorobi48.3190920131755134391.93%70.35%87.18%89.56%78.77%
Prevotella melaninogenica ATCC 25845BBacteroidetes/Chlorobi41.0229624642243186897.69%81.36%91.03%94.36%86.19%
Prevotella ruminicola 23BBacteroidetes/Chlorobi47.7276630462751197499.46%71.37%90.32%94.89%80.84%
Prochlorococcus marinus str. AS9601BCyanobacteria31.3192218911853168196.41%87.46%97.99%97.20%92.73%
Prochlorococcus marinus str. MIT 9211BCyanobacteria38.0185418531796158496.87%85.44%96.92%96.90%91.18%
Prochlorococcus marinus str. MIT 9215BCyanobacteria31.1198519861917172796.57%87.00%96.53%96.55%91.76%
Prochlorococcus marinus str. MIT 9301BCyanobacteria31.3190718751845167496.75%87.78%98.40%97.57%93.09%
Prochlorococcus marinus str. MIT 9303BCyanobacteria50.0299827432510185583.72%61.87%91.51%87.61%76.69%
Prochlorococcus marinus str. MIT 9312BCyanobacteria31.2196319221898176496.69%89.86%98.75%97.72%94.31%
Prochlorococcus marinus str. MIT 9313BCyanobacteria50.7291025652400179482.47%61.65%93.57%88.02%77.61%
Prochlorococcus marinus str. MIT 9515BCyanobacteria30.8190719011855168897.27%88.52%97.58%97.43%93.05%
Prochlorococcus marinus str. NATL1ABCyanobacteria35.0219321552080186294.85%84.91%96.52%95.68%90.71%
Prochlorococcus marinus str. NATL2ABCyanobacteria35.1216321172046185094.59%85.53%96.65%95.62%91.09%
Prochlorococcus marinus subsp. marinus str. CCMP1375BCyanobacteria36.4188219081832156197.34%82.94%96.02%96.68%89.48%
Prochlorococcus marinus subsp. pastoris str. CCMP1986BCyanobacteria30.8195619221883170296.27%87.01%97.97%97.12%92.49%
Propionibacterium acnes KPA171202BActinobacteria60.0229723732214176896.39%76.97%93.30%94.84%85.13%
Propionibacterium acnes SK137BActinobacteria60.1235223182209172293.92%73.21%95.30%94.61%84.26%
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1BActinobacteria243923182282183793.56%75.32%98.45%96.00%86.88%
Prosthecochloris aestuarii DSM 271BBacteroidetes/Chlorobi50.1232723822289205998.37%88.48%96.10%97.23%92.29%
Proteus mirabilis HI4320BGammaproteobacteria38.9370236903594328497.08%88.71%97.40%97.24%93.05%
Providencia alcalifaciens Ban1BGammaproteobacteria99100958795.96%87.88%95.00%95.48%91.44%
Pseudoalteromonas atlantica T6cBGammaproteobacteria44.6428144144255383599.39%89.58%96.40%97.90%92.99%
Pseudoalteromonas haloplanktis TAC125BGammaproteobacteria40.1348834003371300596.65%86.15%99.15%97.90%92.65%
Pseudoalteromonas sp. SM9913BGammaproteobacteria371436043535317595.18%85.49%98.09%96.63%91.79%
Pseudomonas aeruginosa LESB58BGammaproteobacteria66.3596660585854528998.12%88.65%96.63%97.38%92.64%
Pseudomonas aeruginosa PA7BGammaproteobacteria66.4628760315926535194.26%85.11%98.26%96.26%91.69%
Pseudomonas aeruginosa PAO1BGammaproteobacteria66.6557056805516503899.03%90.45%97.11%98.07%93.78%
Pseudomonas aeruginosa UCBPP-PA14BGammaproteobacteria66.3589359075792522098.29%88.58%98.05%98.17%93.32%
Pseudomonas entomophila L48BGammaproteobacteria64.2516850735024453197.21%87.67%99.03%98.12%93.35%
Pseudomonas fluorescens Pf-5BGammaproteobacteria63.3613862766047493798.52%80.43%96.35%97.43%88.39%
Pseudomonas fluorescens Pf0-1BGammaproteobacteria60.5572457395632509298.39%88.96%98.14%98.26%93.55%
Pseudomonas fluorescens SBW25BGammaproteobacteria60.1598860305845491197.61%82.01%96.93%97.27%89.47%
Pseudomonas mendocina ympBGammaproteobacteria64.7459546344548417798.98%90.90%98.14%98.56%94.52%
Pseudomonas putida BIRD-1BGammaproteobacteria496151514913434899.03%87.64%95.38%97.21%91.51%
Pseudomonas putida F1BGammaproteobacteria61.9525452945177466198.53%88.71%97.79%98.16%93.25%
Pseudomonas putida GB-1BGammaproteobacteria61.9541054455347506898.84%93.68%98.20%98.52%95.94%
Pseudomonas putida KT2440BGammaproteobacteria61.5535155945177407596.75%76.15%92.55%94.65%84.35%
Pseudomonas putida W619BGammaproteobacteria61.4518352385121482998.80%93.17%97.77%98.29%95.47%
Pseudomonas stutzeri A1501BGammaproteobacteria63.9413041764010295597.09%71.55%96.02%96.56%83.79%
Pseudomonas syringae pv. phaseolicola 1448ABGammaproteobacteria57.9517355795024419197.12%81.02%90.05%93.59%85.53%
Pseudomonas syringae pv. syringae B728aBGammaproteobacteria59.2513752075045451698.21%87.91%96.89%97.55%92.40%
Pseudomonas syringae pv. tomato str. DC3000BGammaproteobacteria58.3562258625389453595.86%80.67%91.93%93.89%86.30%
Pseudoxanthomonas suwonensis 11-1BGammaproteobacteria306931043059301399.67%98.18%98.55%99.11%98.36%
Psychrobacter arcticus 273-4BGammaproteobacteria42.8214721992125193298.98%89.99%96.63%97.81%93.31%
Psychrobacter cryohalolentis K5BGammaproteobacteria42.2251125552501225399.60%89.73%97.89%98.74%93.81%
Psychrobacter sp. PRwf-1BGammaproteobacteria44.8238524412372216799.45%90.86%97.17%98.31%94.02%
Psychromonas ingrahamii 37BGammaproteobacteria40.1354838283513322599.01%90.90%91.77%95.39%91.33%
Pyrobaculum aerophilum str. IM2ACrenarchaeota51.4260526312497218995.85%84.03%94.91%95.38%89.47%
Pyrobaculum arsenaticum DSM 13514ACrenarchaeota55.1229824912274194998.96%84.81%91.29%95.12%88.05%
Pyrobaculum calidifontis JCM 11548ACrenarchaeota57.2214922922134180899.30%84.13%93.11%96.20%88.62%
Pyrobaculum islandicum DSM 4184ACrenarchaeota49.6197821761955168998.84%85.39%89.84%94.34%87.62%
Pyrococcus furiosus DSM 3638AEuryarchaeota40.8206021022010173197.57%84.03%95.62%96.60%89.83%
Pyrococcus horikoshii OT3AEuryarchaeota41.9205818791692111082.22%53.94%90.05%86.13%71.99%
Rahnella sp. Y9602BGammaproteobacteria511151585092502599.63%98.32%98.72%99.17%98.52%
Ralstonia eutropha H16BBetaproteobacteria66.3662567536487565697.92%85.37%96.06%96.99%90.72%
Ralstonia eutropha JMP134BBetaproteobacteria64.4644666286360550098.67%85.32%95.96%97.31%90.64%
Ralstonia pickettii 12DBBetaproteobacteria63.3536054215301504098.90%94.03%97.79%98.34%95.91%
Ralstonia pickettii 12JBBetaproteobacteria63.6495049944894462498.87%93.41%98.00%98.43%95.71%
Ralstonia solanacearum GMI1000BBetaproteobacteria67.0511150604925416996.36%81.57%97.33%96.85%89.45%
Renibacterium salmoninarum ATCC 33209BActinobacteria56.3350735283306229594.27%65.44%93.71%93.99%79.57%
Rhizobium etli CFN 42BAlphaproteobacteria61.0601662545761459695.76%76.40%92.12%93.94%84.26%
Rhizobium etli CIAT 652BAlphaproteobacteria61.3610960825745468694.04%76.71%94.46%94.25%85.58%
Rhizobium leguminosarum bv. trifolii WSM1325BAlphaproteobacteria60.8700171176923665098.89%94.99%97.27%98.08%96.13%
Rhizobium leguminosarum bv. trifolii WSM2304BAlphaproteobacteria61.2640965426366608399.33%94.91%97.31%98.32%96.11%
Rhizobium leguminosarum bv. viciae 3841BAlphaproteobacteria60.9720773596899540095.73%74.93%93.75%94.74%84.34%
Rhodobacter capsulatus SB 1003BAlphaproteobacteria66.6364336323587337198.46%92.53%98.76%98.61%95.65%
Rhodobacter sphaeroides 2.4.1BAlphaproteobacteria68.8424243614142358097.64%84.39%94.98%96.31%89.69%
Rhodobacter sphaeroides ATCC 17025BAlphaproteobacteria68.2433345044205367197.05%84.72%93.36%95.20%89.04%
Rhodobacter sphaeroides ATCC 17029BAlphaproteobacteria69.0413242124068370498.45%89.64%96.58%97.52%93.11%
Rhodobacter sphaeroides KD131BAlphaproteobacteria69.1456944134321329694.57%72.14%97.92%96.24%85.03%
Rhodococcus equi 103SBActinobacteria450946564482343599.40%76.18%96.26%97.83%86.22%
Rhodococcus erythropolis PR4BActinobacteria62.340341637027091.81%67.00%88.94%90.38%77.97%
Rhodococcus jostii RHA1BActinobacteria67.0914590618492672792.86%73.56%93.72%93.29%83.64%
Rhodococcus opacus B4BActinobacteria67.6820382027951627096.93%76.44%96.94%96.93%86.69%
Rhodoferax ferrireducens T118BBetaproteobacteria59.6441845804349374998.44%84.86%94.96%96.70%89.91%
Rhodomicrobium vannielii ATCC 17100BAlphaproteobacteria62.3356536713556348699.75%97.78%96.87%98.31%97.33%
Rhodopseudomonas palustris BisA53BAlphaproteobacteria64.4487949464733407197.01%83.44%95.69%96.35%89.57%
Rhodopseudomonas palustris BisB18BAlphaproteobacteria65.0488849814746411697.09%84.21%95.28%96.19%89.74%
Rhodopseudomonas palustris BisB5BAlphaproteobacteria64.8440044264305364897.84%82.91%97.27%97.55%90.09%
Rhodopseudomonas palustris DX-1BAlphaproteobacteria65.5491949744888479799.37%97.52%98.27%98.82%97.90%
Rhodopseudomonas palustris HaA2BAlphaproteobacteria66.0468447384621401298.65%85.65%97.53%98.09%91.59%
Rhodopseudomonas palustris TIE-1BAlphaproteobacteria64.9524553085190494698.95%94.30%97.78%98.36%96.04%
Rhodospirillum centenum SWBAlphaproteobacteria70.5403939373870338095.82%83.68%98.30%97.06%90.99%
Rhodospirillum rubrum ATCC 11170BAlphaproteobacteria65.4384138953802333198.98%86.72%97.61%98.30%92.17%
Rhodothermus marinus DSM 4252BBacteroidetes/Chlorobi64.3286229222845255199.41%89.13%97.36%98.39%93.25%
Rickettsia africae ESF-5BAlphaproteobacteria32.410411459102091597.98%87.90%69.91%83.95%78.90%
Rickettsia akari str. HartfordBAlphaproteobacteria32.3125913131156100991.82%80.14%88.04%89.93%84.09%
Rickettsia bellii OSU 85-389BAlphaproteobacteria31.6147615721433132497.09%89.70%91.16%94.12%90.43%
Rickettsia bellii RML369-CBAlphaproteobacteria31.6147615721433132497.09%89.70%91.16%94.12%90.43%
Rickettsia canadensis str. McKielBAlphaproteobacteria31.1147615721433132497.09%89.70%91.16%94.12%90.43%
Rickettsia conorii str. Malish 7BAlphaproteobacteria32.4137314351292112194.10%81.65%90.03%92.07%85.84%
Rickettsia felis URRWXCal2BAlphaproteobacteria32.5151116501493132098.81%87.36%90.48%94.65%88.92%
Rickettsia massiliae MTU5BAlphaproteobacteria32.5980157996739098.67%39.80%61.24%79.96%50.52%
Rickettsia peacockii str. RusticBAlphaproteobacteria32.6947151594187299.37%92.08%62.11%80.74%77.10%
Rickettsia prowazekii Rp22BAlphaproteobacteria29.095288384776788.97%80.57%95.92%92.45%88.25%
Rickettsia rickettsii str. 'Sheila Smith'BAlphaproteobacteria32.5134514131219110190.63%81.86%86.27%88.45%84.06%
Rickettsia rickettsii str. IowaBAlphaproteobacteria32.4138414351212104587.57%75.51%84.46%86.02%79.98%
Rickettsia typhi str. WilmingtonBAlphaproteobacteria28.983586882275198.44%89.94%94.70%96.57%92.32%
Riemerella anatipestifer DSM 15868BBacteroidetes/Chlorobi35197220081967192899.75%97.77%97.96%98.85%97.86%
Robiginitalea biformata HTCC2501BBacteroidetes/Chlorobi55.3321131173083245796.01%76.52%98.91%97.46%87.71%
Roseburia intestinalisBFirmicutes347838763280302794.31%87.03%84.62%89.47%85.83%
Roseburia intestinalis XB6B4BFirmicutes363039843325257391.60%70.88%83.46%87.53%77.17%
Roseiflexus castenholzii DSM 13941BChloroflexi60.7432949074259369698.38%85.38%86.79%92.59%86.09%
Roseiflexus sp. RS-1BChloroflexi60.4448149904401387398.21%86.43%88.20%93.21%87.31%
Roseobacter denitrificans OCh 114BAlphaproteobacteria58.9414441033915319394.47%77.05%95.42%94.95%86.23%
Rothia dentocariosa ATCC 17931BActinobacteria221821522086166594.05%75.07%96.93%95.49%86.00%
Rothia mucilaginosaBActinobacteria59.6199217221636106982.13%53.66%95.01%88.57%74.34%
Rubrobacter xylanophilus DSM 9941BActinobacteria70.5314032403098260298.66%82.87%95.62%97.14%89.24%
Ruegeria pomeroyi DSS-3BAlphaproteobacteria64.1425243914196333298.68%78.36%95.56%97.12%86.96%
Ruegeria sp. TM1040BAlphaproteobacteria60.1386539173796337998.21%87.43%96.91%97.56%92.17%
Ruminococcus albus 7BFirmicutes387140513868384299.92%99.25%95.48%97.70%97.37%
Ruminococcus bromiiBFirmicutes181121241771169897.79%93.76%83.38%90.59%88.57%
Ruminococcus obeumBFirmicutes315735013009282195.31%89.36%85.95%90.63%87.65%
Ruminococcus sp.BFirmicutes326336933014276992.37%84.86%81.61%86.99%83.24%
Ruminococcus sp. 18P13BFirmicutes211823562050192896.79%91.03%87.01%91.90%89.02%
Ruminococcus torquesBFirmicutes279830702664250895.21%89.64%86.78%90.99%88.21%
Saccharomonospora viridis DSM 43017BActinobacteria67.3382739393770290098.51%75.78%95.71%97.11%85.74%
Saccharophagus degradans 2-40BGammaproteobacteria45.8400841433993361199.63%90.09%96.38%98.00%93.24%
Saccharopolyspora erythraea NRRL 2338BActinobacteria71.1719072797053516798.09%71.86%96.90%97.49%84.38%
Salinibacter ruber DSM 13855BBacteroidetes/Chlorobi66.1283230362773154197.92%54.41%91.34%94.63%72.88%
Salinispora arenicola CNS-205BActinobacteria69.5491850954835398698.31%81.05%94.90%96.60%87.97%
Salinispora tropica CNB-440BActinobacteria69.5453846824450357698.06%78.80%95.04%96.55%86.92%
Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980BGammaproteobacteria51.4451142784073317890.29%70.45%95.21%92.75%82.83%
Salmonella enterica subsp. enterica serovar Agona str. SL483BGammaproteobacteria52.0461545084249382692.07%82.90%94.25%93.16%88.58%
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BGammaproteobacteria52.1466747924377367593.79%78.74%91.34%92.56%85.04%
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BGammaproteobacteria52.1461846844246382191.94%82.74%90.65%91.30%86.70%
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BGammaproteobacteria52.2425143634143362697.46%85.30%94.96%96.21%90.13%
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BGammaproteobacteria52.2402444663913339697.24%84.39%87.62%92.43%86.01%
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BGammaproteobacteria52.1478046804399396692.03%82.97%94.00%93.01%88.48%
Salmonella enterica subsp. enterica serovar Newport str. SL254BGammaproteobacteria52.2480647104446400092.51%83.23%94.39%93.45%88.81%
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BGammaproteobacteria52.2428043514069343495.07%80.23%93.52%94.29%86.88%
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BGammaproteobacteria52.2409343483965350796.87%85.68%91.19%94.03%88.44%
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BGammaproteobacteria52.1560145614437373479.22%66.67%97.28%88.25%81.97%
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BGammaproteobacteria52.2464146904326337193.21%72.64%92.24%92.73%82.44%
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BGammaproteobacteria52.2462845504267384692.20%83.10%93.78%92.99%88.44%
Salmonella enterica subsp. enterica serovar Typhi str. CT18BGammaproteobacteria51.937738534828292.31%74.80%90.39%91.35%82.60%
Salmonella enterica subsp. enterica serovar Typhi str. Ty2BGammaproteobacteria52.1432346324175370796.58%85.75%90.13%93.36%87.94%
Salmonella enterica subsp. enterica serovar TyphimuriumBGammaproteobacteria52.2446845624332377596.96%84.49%94.96%95.96%89.72%
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBGammaproteobacteria52.2547546534532396282.78%72.37%97.40%90.09%84.88%
Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74BGammaproteobacteria484347714586376494.69%77.72%96.12%95.41%86.92%
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BGammaproteobacteria52.2455446354441391097.52%85.86%95.81%96.67%90.84%
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344BGammaproteobacteria446945494363380197.63%85.05%95.91%96.77%90.48%
Sanguibacter keddieii DSM 10542BActinobacteria71.9371137173677312299.08%84.13%98.92%99.00%91.53%
Sebaldella termitidis ATCC 33386BFusobacteria33.4415242024140407199.71%98.05%98.52%99.12%98.29%
Segniliparus rotundus DSM 44985BActinobacteria68300930763001289599.73%96.21%97.56%98.65%96.89%
Serratia proteamaculans 568BGammaproteobacteria55.0494550674905443699.19%89.71%96.80%98.00%93.25%
Shewanella amazonensis SB2BBGammaproteobacteria53.6364637233627326199.48%89.44%97.42%98.45%93.43%
Shewanella baltica OS155BGammaproteobacteria46.2448947034454405099.22%90.22%94.71%96.96%92.46%
Shewanella baltica OS185BGammaproteobacteria46.3438445654360400499.45%91.33%95.51%97.48%93.42%
Shewanella baltica OS195BGammaproteobacteria46.2468748184629420998.76%89.80%96.08%97.42%92.94%
Shewanella baltica OS223BGammaproteobacteria46.3443045554386426699.01%96.30%96.29%97.65%96.29%
Shewanella baltica OS678BGammaproteobacteria452846214505442899.49%97.79%97.49%98.49%97.64%
Shewanella denitrificans OS217BGammaproteobacteria45.1375539053726334199.23%88.97%95.42%97.32%92.20%
Shewanella frigidimarina NCIMB 400BGammaproteobacteria41.6402941244014364999.63%90.57%97.33%98.48%93.95%
Shewanella halifaxensis HAW-EB4BGammaproteobacteria44.6427844064241383499.14%89.62%96.26%97.70%92.94%
Shewanella loihica PV-4BGammaproteobacteria53.7386039033827343799.15%89.04%98.05%98.60%93.55%
Shewanella oneidensis MR-1BGammaproteobacteria45.9477346134275368389.57%77.16%92.67%91.12%84.92%
Shewanella pealeana ATCC 700345BGammaproteobacteria44.7424343694216381299.36%89.84%96.50%97.93%93.17%
Shewanella piezotolerans WP3BGammaproteobacteria43.3493445934459372290.37%75.44%97.08%93.73%86.26%
Shewanella putrefaciens 200BGammaproteobacteria44.4417043384148409499.47%98.18%95.62%97.55%96.90%
Shewanella putrefaciens CN-32BGammaproteobacteria44.5397340523939357899.14%90.06%97.21%98.18%93.63%
Shewanella sediminis HAW-EB3BGammaproteobacteria46.1449846554474403399.47%89.66%96.11%97.79%92.89%
Shewanella sp. ANA-3BGammaproteobacteria47.9436045314328389799.27%89.38%95.52%97.39%92.45%
Shewanella sp. MR-4BGammaproteobacteria47.9392440153903354799.46%90.39%97.21%98.34%93.80%
Shewanella sp. MR-7BGammaproteobacteria47.9401441323984361699.25%90.08%96.42%97.84%93.25%
Shewanella sp. W3-18-1BGammaproteobacteria44.6404441604010363299.16%89.81%96.39%97.78%93.10%
Shewanella violacea DSS12BGammaproteobacteria434740873983308891.63%71.04%97.46%94.54%84.25%
Shewanella woodyi ATCC 51908BGammaproteobacteria43.7487349964857457999.67%93.97%97.22%98.44%95.59%
Shigella boydii CDC 3083-94BGammaproteobacteria51.0455851214148369191.00%80.98%81.00%86.00%80.99%
Shigella boydii Sb227BGammaproteobacteria51.1429148224079319295.06%74.39%84.59%89.83%79.49%
Shigella dysenteriae Sd197BGammaproteobacteria51.0450852174001315088.75%69.88%76.69%82.72%73.28%
Shigella flexneri 2002017BGammaproteobacteria50.6470750914335342892.10%72.83%85.15%88.62%78.99%
Shigella flexneri 2a str. 2457TBGammaproteobacteria50.9407347203884319695.36%78.47%82.29%88.82%80.38%
Shigella flexneri 2a str. 301BGammaproteobacteria50.7470650064427334794.07%71.12%88.43%91.25%79.78%
Shigella flexneri 5 str. 8401BGammaproteobacteria50.9411746804001321297.18%78.02%85.49%91.34%81.75%
Shigella sonnei Ss046BGammaproteobacteria50.8447751054210332394.04%74.22%82.47%88.25%78.35%
Sideroxydans lithotrophicus ES-1BGammaproteobacteria57.5298029742954286699.13%96.17%99.33%99.23%97.75%
Sinorhizobium fredii NGR234BAlphaproteobacteria62.4636664136099515995.81%81.04%95.10%95.45%88.07%
Sinorhizobium medicae WSM419BAlphaproteobacteria61.1619964976018536897.08%86.59%92.63%94.85%89.61%
Sinorhizobium meliloti 1021BAlphaproteobacteria62.2622563035984512396.13%82.30%94.94%95.53%88.62%
Slackia heliotrinireducens DSM 20476BActinobacteria60.2276527732714239698.16%86.65%97.87%98.01%92.26%
Sodalis glossinidius str. 'morsitans'BGammaproteobacteria54.5251857432457205497.58%81.57%42.78%70.18%62.18%
Sorangium cellulosum 'So ce 56'BDeltaproteobacteria71.4938496649158699597.59%74.54%94.76%96.18%84.65%
Sphaerobacter thermophilus DSM 20745BChloroflexi68.1348435233467336299.51%96.50%98.41%98.96%97.45%
Sphingobium japonicum UT26SBAlphaproteobacteria439441514093340593.15%77.49%98.60%95.88%88.05%
Sphingomonas wittichii RW1BAlphaproteobacteria67.9534554645263446298.47%83.48%96.32%97.39%89.90%
Sphingopyxis alaskensis RB2256BAlphaproteobacteria65.5319632403101259397.03%81.13%95.71%96.37%88.42%
Spirochaeta smaragdinae DSM 11293BSpirochaetes50422042884209414299.74%98.15%98.16%98.95%98.15%
Spirochaeta sp. BuddyBSpirochaetes301630713013296699.90%98.34%98.11%99.01%98.23%
Spirochaeta thermophila DSM 6192BSpirochaetes220322292171183898.55%83.43%97.40%97.97%90.41%
Spirosoma linguale DSM 74BBacteroidetes/Chlorobi50.1693271306863635599.00%91.68%96.26%97.63%93.97%
Stackebrandtia nassauensis DSM 44728BActinobacteria68.1637964416345600799.47%94.17%98.51%98.99%96.34%
Staphylococcus aureus 04-02981BFirmicutes32.9265025862555232096.42%87.55%98.80%97.61%93.17%
Staphylococcus aureus ED98BFirmicutes32.8268826432584238496.13%88.69%97.77%96.95%93.23%
Staphylococcus aureus RF122BFirmicutes32.8252725952424221095.92%87.46%93.41%94.67%90.43%
Staphylococcus aureus subsp. aureus COLBFirmicutes32.8267425772497230193.38%86.05%96.90%95.14%91.47%
Staphylococcus aureus subsp. aureus ED133BFirmicutes265326492555230996.31%87.03%96.45%96.38%91.74%
Staphylococcus aureus subsp. aureus JH1BFirmicutes32.9277927412688253696.73%91.26%98.07%97.40%94.66%
Staphylococcus aureus subsp. aureus JH9BFirmicutes32.9272627422674251998.09%92.41%97.52%97.81%94.96%
Staphylococcus aureus subsp. aureus JKD6159BFirmicutes257726122544239398.72%92.86%97.40%98.06%95.13%
Staphylococcus aureus subsp. aureus MRSA252BFirmicutes32.8270827042571239194.94%88.29%95.08%95.01%91.69%
Staphylococcus aureus subsp. aureus MSSA476BFirmicutes32.8261125682511234296.17%89.70%97.78%96.98%93.74%
Staphylococcus aureus subsp. aureus MW2BFirmicutes32.8263225652544239396.66%90.92%99.18%97.92%95.05%
Staphylococcus aureus subsp. aureus Mu3BFirmicutes32.9269826632621237597.15%88.03%98.42%97.78%93.23%
Staphylococcus aureus subsp. aureus Mu50BFirmicutes32.8273326912647240296.85%87.89%98.36%97.61%93.13%
Staphylococcus aureus subsp. aureus N315BFirmicutes32.8262425922554232897.33%88.72%98.53%97.93%93.63%
Staphylococcus aureus subsp. aureus NCTC 8325BFirmicutes32.9289226312614227890.39%78.77%99.35%94.87%89.06%
Staphylococcus aureus subsp. aureus ST398BFirmicutes32.9270926912636244897.31%90.37%97.96%97.63%94.16%
Staphylococcus aureus subsp. aureus TCH60BFirmicutes32.7270026142582213995.63%79.22%98.78%97.20%89.00%
Staphylococcus aureus subsp. aureus TW20BFirmicutes32.8281428952762258898.15%91.97%95.41%96.78%93.69%
Staphylococcus aureus subsp. aureus USA300_FPR3757BFirmicutes32.7260426992573228898.81%87.86%95.33%97.07%91.60%
Staphylococcus aureus subsp. aureus USA300_TCH1516BFirmicutes32.7268926952489224692.56%83.53%92.36%92.46%87.94%
Staphylococcus aureus subsp. aureus str. JKD6008BFirmicutes32.7268027272618226997.69%84.66%96.00%96.84%90.33%
Staphylococcus aureus subsp. aureus str. NewmanBFirmicutes32.9262426982559228997.52%87.23%94.85%96.19%91.04%
Staphylococcus carnosus subsp. carnosus TM300BFirmicutes34.6245124912426228698.98%93.27%97.39%98.19%95.33%
Staphylococcus epidermidis ATCC 12228BFirmicutes32.0248523542320197393.36%79.40%98.56%95.96%88.98%
Staphylococcus epidermidis RP62ABFirmicutes32.1252524342355218893.27%86.65%96.75%95.01%91.70%
Staphylococcus haemolyticus JCSC1435BFirmicutes32.8269526002569238795.32%88.57%98.81%97.07%93.69%
Staphylococcus lugdunensis HKU09-01BFirmicutes33.9249024712435228597.79%91.77%98.54%98.17%95.16%
Staphylococcus pseudintermedius ED99BFirmicutes235623512267213196.22%90.45%96.43%96.32%93.44%
Staphylococcus pseudintermedius HKU10-03BFirmicutes245024562384222897.31%90.94%97.07%97.19%94.00%
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305BFirmicutes33.2251325022459233997.85%93.08%98.28%98.07%95.68%
Staphylothermus hellenicus DSM 12710ACrenarchaeota36.9159916461581147698.87%92.31%96.05%97.46%94.18%
Staphylothermus marinus F1ACrenarchaeota35.7157116591561132199.36%84.09%94.09%96.73%89.09%
Starkeya novella DSM 506BAlphaproteobacteria67.9443144824414429699.62%96.95%98.48%99.05%97.72%
Stenotrophomonas maltophilia K279aBGammaproteobacteria66.3441344184287344597.14%78.06%97.03%97.09%87.55%
Stenotrophomonas maltophilia R551-3BGammaproteobacteria66.3403940564028380499.73%94.18%99.31%99.52%96.75%
Stigmatella aurantiaca DW4/3-1BDeltaproteobacteria835382878028630796.11%75.51%96.87%96.49%86.19%
Streptobacillus moniliformis DSM 12112BFusobacteria26.3143815401435139499.79%96.94%93.18%96.49%95.06%
Streptococcus agalactiae 2603V/RBFirmicutes35.6212521062030188795.53%88.80%96.39%95.96%92.60%
Streptococcus agalactiae A909BFirmicutes35.6199620701965183098.45%91.68%94.93%96.69%93.31%
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394BFirmicutes205621562004188097.47%91.44%92.95%95.21%92.19%
Streptococcus dysgalactiae subsp. equisimilis GGS_124BFirmicutes39.6210021022026167196.48%79.57%96.38%96.43%87.98%
Streptococcus equi subsp. equi 4047BFirmicutes41.3205221701991177597.03%86.50%91.75%94.39%89.13%
Streptococcus equi subsp. zooepidemicusBFirmicutes41.5193319581850163695.71%84.64%94.48%95.10%89.56%
Streptococcus equi subsp. zooepidemicus MGCS10565BFirmicutes41.8189418621765136193.19%71.86%94.79%93.99%83.32%
Streptococcus gallolyticus UCN34BFirmicutes37.6226322552229206798.50%91.34%98.85%98.67%95.09%
Streptococcus gordonii str. Challis substr. CH1BFirmicutes40.5205020551986183196.88%89.32%96.64%96.76%92.98%
Streptococcus mitis B6BFirmicutes40.0202020501982182098.12%90.10%96.68%97.40%93.39%
Streptococcus mutans NN2025BFirmicutes189718701833157396.63%82.92%98.02%97.32%90.47%
Streptococcus mutans UA159BFirmicutes36.8196118921868166695.26%84.96%98.73%96.99%91.84%
Streptococcus pneumoniae 670-6BBFirmicutes40236722832208204993.28%86.57%96.71%95.00%91.64%
Streptococcus pneumoniae 70585BFirmicutes39.7220321942068194393.87%88.20%94.26%94.06%91.23%
Streptococcus pneumoniae AP200BFirmicutes221721172098192594.63%86.83%99.10%96.87%92.97%
Streptococcus pneumoniae ATCC 700669BFirmicutes39.5206221841993186796.65%90.54%91.25%93.95%90.90%
Streptococcus pneumoniae CGSP14BFirmicutes39.5220721592060150993.34%68.37%95.41%94.38%81.89%
Streptococcus pneumoniae D39BFirmicutes39.7191519961826169895.35%88.67%91.48%93.42%90.08%
Streptococcus pneumoniae G54BFirmicutes39.7211620682003187394.66%88.52%96.86%95.76%92.69%
Streptococcus pneumoniae Hungary19A-6BFirmicutes39.6215622412035192694.39%89.33%90.81%92.60%90.07%
Streptococcus pneumoniae INV104BFirmicutes186921351804165796.52%88.66%84.50%90.51%86.58%
Streptococcus pneumoniae INV200BFirmicutes198620391862170893.76%86.00%91.32%92.54%88.66%
Streptococcus pneumoniae JJABFirmicutes39.7212420961986187393.50%88.18%94.75%94.13%91.47%
Streptococcus pneumoniae OXC141BFirmicutes189020361821167196.35%88.41%89.44%92.89%88.93%
Streptococcus pneumoniae P1031BFirmicutes39.7207421011930181993.06%87.70%91.86%92.46%89.78%
Streptococcus pneumoniae R6BFirmicutes39.7204419921928146194.32%71.48%96.79%95.56%84.13%
Streptococcus pneumoniae TCH8431/19ABFirmicutes40.2227620632048169189.98%74.30%99.27%94.63%86.78%
Streptococcus pneumoniae TIGR4BFirmicutes39.7212521241931167790.87%78.92%90.91%90.89%84.92%
Streptococcus pneumoniae Taiwan19F-14BFirmicutes39.8204520851919180193.84%88.07%92.04%92.94%90.05%
Streptococcus pyogenes M1 GASBFirmicutes38.5169617801672150998.58%88.97%93.93%96.26%91.45%
Streptococcus pyogenes MGAS10270BFirmicutes38.4198818901851137393.11%69.06%97.94%95.52%83.50%
Streptococcus pyogenes MGAS10394BFirmicutes38.7188718391786135294.65%71.65%97.12%95.88%84.38%
Streptococcus pyogenes MGAS10750BFirmicutes38.3198018931854139593.64%70.45%97.94%95.79%84.20%
Streptococcus pyogenes MGAS2096BFirmicutes38.7189918151766128893.00%67.83%97.30%95.15%82.56%
Streptococcus pyogenes MGAS315BFirmicutes38.6186518861823161397.75%86.49%96.66%97.20%91.57%
Streptococcus pyogenes MGAS5005BFirmicutes38.5186517841752159193.94%85.31%98.21%96.07%91.76%
Streptococcus pyogenes MGAS6180BFirmicutes38.4189518241784132194.14%69.71%97.81%95.97%83.76%
Streptococcus pyogenes MGAS8232BFirmicutes38.5184518931797165797.40%89.81%94.93%96.16%92.37%
Streptococcus pyogenes MGAS9429BFirmicutes38.5187817561723127891.75%68.05%98.12%94.93%83.09%
Streptococcus pyogenes NZ131BFirmicutes38.6170317341659153897.42%90.31%95.67%96.55%92.99%
Streptococcus pyogenes SSI-1BFirmicutes38.6186118851798145996.61%78.40%95.38%96.00%86.89%
Streptococcus pyogenes str. ManfredoBFirmicutes38.6176318111704158096.65%89.62%94.09%95.37%91.86%
Streptococcus sanguinis SK36BFirmicutes43.4227222742217194197.58%85.43%97.49%97.54%91.46%
Streptococcus suis 05ZYH33BFirmicutes41.1218621132021141592.45%64.73%95.65%94.05%80.19%
Streptococcus suis 98HAH33BFirmicutes41.1218921182031141592.78%64.64%95.89%94.34%80.27%
Streptococcus suis BM407BFirmicutes41.0206220671923178493.26%86.52%93.03%93.15%89.78%
Streptococcus suis GZ1BFirmicutes41.4197819431905135896.31%68.66%98.04%97.18%83.35%
Streptococcus suis JS14BFirmicutes206620471971187295.40%90.61%96.29%95.84%93.45%
Streptococcus suis P1/7BFirmicutes40185618961796167896.77%90.41%94.73%95.75%92.57%
Streptococcus suis SC84BFirmicutes41.1199019811872174694.07%87.74%94.50%94.28%91.12%
Streptococcus thermophilus CNRZ1066BFirmicutes39.1191618991809136794.42%71.35%95.26%94.84%83.30%
Streptococcus thermophilus LMD-9BFirmicutes39.1171719551625150894.64%87.83%83.12%88.88%85.47%
Streptococcus thermophilus LMG 18311BFirmicutes39.1189018981804136895.45%72.38%95.05%95.25%83.71%
Streptococcus thermophilus ND03BFirmicutes192019411795162993.49%84.84%92.48%92.98%88.66%
Streptococcus uberis 0140JBFirmicutes36.6178818071751164097.93%91.72%96.90%97.42%94.31%
Streptomyces avermitilis MA-4680BActinobacteria70.7767779157527548998.05%71.50%95.10%96.57%83.30%
Streptomyces bingchenggensis BCW-1BActinobacteria1002399689693759896.71%75.81%97.24%96.97%86.52%
Streptomyces coelicolor A3(2)BActinobacteria72.039043336928494.62%72.82%85.22%89.92%79.02%
Streptomyces flavogriseus ATCC 33331BActinobacteria71.0629964236286612599.79%97.24%97.87%98.83%97.55%
Streptomyces griseus subsp. griseus NBRC 13350BActinobacteria72.2713871137002551598.09%77.26%98.44%98.27%87.85%
Streptomyces scabiei 87.22BActinobacteria877687918569608197.64%69.29%97.47%97.56%83.38%
Streptosporangium roseum DSM 43021BActinobacteria70.9897292308882823799.00%91.81%96.23%97.61%94.02%
Sulfolobus acidocaldarius DSM 639ACrenarchaeota36.7222223552198185998.92%83.66%93.33%96.13%88.50%
Sulfolobus islandicus HVE10/4ACrenarchaeota272429292678240298.31%88.18%91.43%94.87%89.80%
Sulfolobus islandicus L.D.8.5ACrenarchaeota35.3295031162826251395.80%85.19%90.69%93.24%87.94%
Sulfolobus islandicus L.S.2.15ACrenarchaeota35.1273930712690242198.21%88.39%87.59%92.90%87.99%
Sulfolobus islandicus M.14.25ACrenarchaeota35.1260928792572233098.58%89.31%89.34%93.96%89.32%
Sulfolobus islandicus M.16.27ACrenarchaeota35.0265729562619236498.57%88.97%88.60%93.58%88.79%
Sulfolobus islandicus M.16.4ACrenarchaeota35.0273628512681243497.99%88.96%94.04%96.01%91.50%
Sulfolobus islandicus REY15AACrenarchaeota264528162588230497.84%87.11%91.90%94.87%89.51%
Sulfolobus islandicus Y.G.57.14ACrenarchaeota35.4290530492816252596.94%86.92%92.36%94.65%89.64%
Sulfolobus islandicus Y.N.15.51ACrenarchaeota35.3290032562824253597.38%87.41%86.73%92.06%87.07%
Sulfolobus solfataricus 98/2ACrenarchaeota35.8267529752633246098.43%91.96%88.50%93.47%90.23%
Sulfolobus solfataricus P2ACrenarchaeota35.8299432812927233797.76%78.06%89.21%93.49%83.63%
Sulfolobus tokodaii str. 7ACrenarchaeota32.8282630052669223594.44%79.09%88.82%91.63%83.95%
Sulfuricurvum kujiense DSM 16994BEpsilonproteobacteria45279828162787274499.61%98.07%98.97%99.29%98.52%
Sulfurihydrogenibium azorense Az-Fu1BAquificae32.8172517161702163098.67%94.49%99.18%98.93%96.84%
Sulfurihydrogenibium sp. YO3AOP1BAquificae32.0172018151712167499.53%97.33%94.33%96.93%95.83%
Sulfurimonas autotrophica DSM 16294BEpsilonproteobacteria215721622151209199.72%96.94%99.49%99.61%98.22%
Sulfurimonas denitrificans DSM 1251BEpsilonproteobacteria34.5209621662088195299.62%93.13%96.40%98.01%94.76%
Sulfurospirillum deleyianum DSM 6946BEpsilonproteobacteria39.0226522852255220299.56%97.22%98.69%99.12%97.95%
Sulfurovum sp. NBC37-1BEpsilonproteobacteria43.9246925532440226598.83%91.74%95.57%97.20%93.66%
Symbiobacterium thermophilum IAM 14863BFirmicutes68.7333732963231212596.82%63.68%98.03%97.43%80.85%
Synechococcus elongatus PCC 6301BCyanobacteria55.5252426912500201899.05%79.95%92.90%95.98%86.43%
Synechococcus elongatus PCC 7942BCyanobacteria55.4266127252622234498.53%88.09%96.22%97.38%92.15%
Synechococcus sp. CC9311BCyanobacteria52.4289128792591172389.62%59.60%90.00%89.81%74.80%
Synechococcus sp. CC9605BCyanobacteria59.2264128942519197795.38%74.86%87.04%91.21%80.95%
Synechococcus sp. CC9902BCyanobacteria54.2230524612251179797.66%77.96%91.47%94.56%84.71%
Synechococcus sp. JA-2-3B'a(2-13)BCyanobacteria58.5286328432667204293.15%71.32%93.81%93.48%82.57%
Synechococcus sp. JA-3-3AbBCyanobacteria60.2276127502578197593.37%71.53%93.75%93.56%82.64%
Synechococcus sp. PCC 7002BCyanobacteria49.2318632343112261097.68%81.92%96.23%96.95%89.07%
Synechococcus sp. WH 7803BCyanobacteria60.2253325572476197897.75%78.09%96.83%97.29%87.46%
Synechocystis sp. PCC 6803BCyanobacteria47.4355937103504287198.45%80.67%94.45%96.45%87.56%
Synergistetes bacterium SGP1BOther Bacteria143523571380122396.17%85.23%58.55%77.36%71.89%
Syntrophobacter fumaroxidans MPOBBDeltaproteobacteria59.9406541543873326295.28%80.25%93.24%94.26%86.74%
Syntrophobotulus glycolicus DSM 8271BFirmicutes325133353242319699.72%98.31%97.21%98.47%97.76%
Syntrophomonas wolfei subsp. wolfei str. GoettingenBOther Bacteria44.9250426562470216698.64%86.50%93.00%95.82%89.75%
Syntrophothermus lipocalidus DSM 12680BFirmicutesLow231324002306225499.70%97.45%96.08%97.89%96.77%
Syntrophus aciditrophicus SBBDeltaproteobacteria51.5316829312808190188.64%60.01%95.80%92.22%77.90%
Taylorella equigenitalis MCE9BBetaproteobacteria155615461527137598.14%88.37%98.77%98.45%93.57%
Teredinibacter turnerae T7901BGammaproteobacteria50.9425642184017352094.38%82.71%95.23%94.81%88.97%
Terriglobus saanensis SP1PR4BAcidobacteria418042744160405299.52%96.94%97.33%98.43%97.14%
Thauera sp. MZ1TBBetaproteobacteria68.3397740543952378299.37%95.10%97.48%98.43%96.29%
Thermaerobacter marianensis DSM 12885BFirmicutes232623822323229199.87%98.50%97.52%98.70%98.01%
Thermanaerovibrio acidaminovorans DSM 6589BOther Bacteria63.8173717631730164499.60%94.65%98.13%98.86%96.39%
Thermincola potens JRBFirmicutes294830092940289399.73%98.13%97.71%98.72%97.92%
Thermoanaerobacter brockii subsp. finnii Ako-1BFirmicutes34.3220823132201218399.68%98.87%95.16%97.42%97.01%
Thermoanaerobacter italicus Ab9BFirmicutes34.1226923822260223099.60%98.28%94.88%97.24%96.58%
Thermoanaerobacter mathranii subsp. mathranii str. A3BFirmicutes34.2215822632149213199.58%98.75%94.96%97.27%96.86%
Thermoanaerobacter pseudethanolicus ATCC 33223BFirmicutes34.5224323242215204698.75%91.22%95.31%97.03%93.26%
Thermoanaerobacter sp. X513BFirmicutes34.3233024402319229899.53%98.63%95.04%97.28%96.83%
Thermoanaerobacter sp. X514BFirmicutes34.5235024462323214298.85%91.15%94.97%96.91%93.06%
Thermoanaerobacter tengcongensis MB4BFirmicutes37.6258826742505213796.79%82.57%93.68%95.24%88.13%
Thermoanaerobacterium thermosaccharolyticum DSM 571BFirmicutes34.0260027542596255899.85%98.38%94.26%97.05%96.32%
Thermobaculum terrenum ATCC BAA-798BOther Bacteria53.5283128682797268698.80%94.88%97.52%98.16%96.20%
Thermobifida fusca YXBActinobacteria67.5311031463040251897.75%80.96%96.63%97.19%88.80%
Thermobispora bispora DSM 43833BActinobacteria70354635893518332999.21%93.88%98.02%98.62%95.95%
Thermococcus barophilus MPAEuryarchaeota41.7226622282205188997.31%83.36%98.97%98.14%91.17%
Thermococcus gammatolerans EJ3AEuryarchaeota53.6215621752134150798.98%69.90%98.11%98.55%84.01%
Thermococcus kodakarensis KOD1AEuryarchaeota52.0230523142285198599.13%86.12%98.75%98.94%92.43%
Thermococcus onnurineus NA1AEuryarchaeota51.3197619981960176299.19%89.17%98.10%98.64%93.63%
Thermococcus sibiricus MM 739AEuryarchaeota40.2203720211939138695.19%68.04%95.94%95.57%81.99%
Thermocrinis albus DSM 14484BAquificae46.9159316211586153999.56%96.61%97.84%98.70%97.23%
Thermodesulfovibrio yellowstonii DSM 11347BOther Bacteria34.1203320071981186097.44%91.49%98.70%98.07%95.10%
Thermofilum pendens Hrk 5ACrenarchaeota57.6187619311869155999.63%83.10%96.79%98.21%89.95%
Thermomicrobium roseum DSM 5159BChloroflexi64.3285826512544214289.01%74.95%95.96%92.49%85.46%
Thermomonospora curvata DSM 43183BActinobacteria71.6489149824853462799.22%94.60%97.41%98.32%96.01%
Thermoplasma volcanium GSS1AEuryarchaeota39.9152616361493115497.84%75.62%91.26%94.55%83.44%
Thermoproteus neutrophilus V24StaACrenarchaeota59.9196620511957174599.54%88.76%95.42%97.48%92.09%
Thermosediminibacter oceani DSM 16646BFirmicutes50219623072193216399.86%98.50%95.06%97.46%96.78%
Thermosipho africanus TCF52BBThermotogae30.8195620051912180897.75%92.43%95.36%96.56%93.90%
Thermosipho melanesiensis BI429BThermotogae31.4187919291851172498.51%91.75%95.96%97.23%93.85%
Thermosphaera aggregans DSM 11486ACrenarchaeota138814151376128299.14%92.36%97.24%98.19%94.80%
Thermosynechococcus elongatus BP-1BCyanobacteria53.9247425202421185097.86%74.78%96.07%96.96%85.42%
Thermotoga lettingae TMOBThermotogae38.7203820842026182099.41%89.30%97.22%98.31%93.26%
Thermotoga maritima MSB8BThermotogae46.2184618661798145197.40%78.60%96.36%96.88%87.48%
Thermotoga naphthophila RKU-10BThermotogae46.1176818231758169699.43%95.93%96.43%97.93%96.18%
Thermotoga neapolitana DSM 4359BThermotogae46.9193819151882119197.11%61.46%98.28%97.69%79.87%
Thermotoga petrophila RKU-1BThermotogae46.1178518101771154899.22%86.72%97.85%98.53%92.28%
Thermotoga sp. RQ2BThermotogae46.2181918621814170799.73%93.84%97.42%98.57%95.63%
Thermovibrio ammonificans HB-1BAquificae181218331811179999.94%99.28%98.80%99.37%99.04%
Thermus scotoductus SA-01BDeinococcus-Thermus246124582403208297.64%84.60%97.76%97.70%91.18%
Thermus thermophilus HB27BDeinococcus-Thermus69.4221022252188191999.00%86.83%98.34%98.67%92.58%
Thermus thermophilus HB8BDeinococcus-Thermus69.5223822242187193197.72%86.28%98.34%98.03%92.31%
Thioalkalivibrio sp. HL-EbGR7BGammaproteobacteria65.1328233183260311199.33%94.79%98.25%98.79%96.52%
Thioalkalivibrio sp. K90mixBGammaproteobacteria65.5285328932847278099.79%97.44%98.41%99.10%97.93%
Thiobacillus denitrificans ATCC 25259BBetaproteobacteria66.1282728192758244497.56%86.45%97.84%97.70%92.14%
Thiomicrospira crunogena XCL-2BGammaproteobacteria43.1219622672191205199.77%93.40%96.65%98.21%95.02%
Thiomonas intermedia K12BBetaproteobacteria63.8317132623151308999.37%97.41%96.60%97.98%97.01%
Tolumonas auensis DSM 9187BGammaproteobacteria49.0313031763114303699.49%97.00%98.05%98.77%97.52%
Treponema denticola ATCC 35405BSpirochaetes37.9276925782514225690.79%81.47%97.52%94.15%89.50%
Treponema pallidum subsp. pallidum SS14BSpirochaetes52.81028100795567992.90%66.05%94.84%93.87%80.44%
Treponema pallidum subsp. pallidum str. ChicagoBSpirochaetes52.898298889066990.63%68.13%90.08%90.36%79.10%
Treponema pallidum subsp. pallidum str. NicholsBSpirochaetes52.81031100995867592.92%65.47%94.95%93.93%80.21%
Trichodesmium erythraeum IMS101BCyanobacteria34.1445154324314401496.92%90.18%79.42%88.17%84.80%
Tropheryma whipplei str. TwistBActinobacteria46.380893477953196.41%65.72%83.40%89.91%74.56%
Truepera radiovictrix DSM 17093BDeinococcus-Thermus293829882931288799.76%98.26%98.09%98.93%98.18%
Tsukamurella paurometabola DSM 20162BActinobacteria68.4424243364226396799.62%93.52%97.46%98.54%95.49%
Ureaplasma parvum serovar 3 str. ATCC 27815BFirmicutes25.560960860457899.18%94.91%99.34%99.26%97.13%
Ureaplasma parvum serovar 3 str. ATCC 700970BFirmicutes25.561162060854499.51%89.03%98.06%98.79%93.55%
Ureaplasma urealyticum serovar 10 str. ATCC 33699BOther Bacteria25.864666063559898.30%92.57%96.21%97.25%94.39%
Variovorax paradoxus EPSBBetaproteobacteria67.5595160025938582699.78%97.90%98.93%99.36%98.42%
Variovorax paradoxus S110BBetaproteobacteria67.5627963036224587899.12%93.61%98.75%98.94%96.18%
Veillonella parvula DSM 2008BFirmicutes38.6184318651841180699.89%97.99%98.71%99.30%98.35%
Verminephrobacter eiseniae EF01-2BBetaproteobacteria65.2494849504667388294.32%78.46%94.28%94.30%86.37%
Vibrio cholerae Ban5BGammaproteobacteria9998927992.93%79.80%93.88%93.40%86.84%
Vibrio cholerae Ind4BGammaproteobacteria8886837694.32%86.36%96.51%95.41%91.44%
Vibrio cholerae Ind5BGammaproteobacteria9693888091.67%83.33%94.62%93.15%88.98%
Vibrio cholerae M66-2BGammaproteobacteria47.6369334473369234291.23%63.42%97.74%94.48%80.58%
Vibrio cholerae MJ-1236BGammaproteobacteria47.3377537633565256894.44%68.03%94.74%94.59%81.38%
Vibrio cholerae Mex1BGammaproteobacteria7781736794.81%87.01%90.12%92.46%88.57%
Vibrio cholerae O1 biovar El Tor str. N16961BGammaproteobacteria47.5382835943453238490.20%62.28%96.08%93.14%79.18%
Vibrio cholerae O395BGammaproteobacteria47.5387437403671266994.76%68.90%98.16%96.46%83.53%
Vibrio cholerae O395BGammaproteobacteria47.5393437403608256791.71%65.25%96.47%94.09%80.86%
Vibrio fischeri ES114BGammaproteobacteria38.3382338193764342198.46%89.48%98.56%98.51%94.02%
Vibrio fischeri MJ11BGammaproteobacteria38.2404039933953362597.85%89.73%99.00%98.42%94.36%
Vibrio fluvialis Ind1BGammaproteobacteria110115987989.09%71.82%85.22%87.15%78.52%
Vibrio furnissii NCTC 11218BGammaproteobacteria446345424357366097.62%82.01%95.93%96.78%88.97%
Vibrio harveyi ATCC BAA-1116BGammaproteobacteria45.4606556385461446690.04%73.64%96.86%93.45%85.25%
Vibrio parahaemolyticus RIMD 2210633BGammaproteobacteria45.4483345834455378092.18%78.21%97.21%94.69%87.71%
Vibrio sp. Ex25BGammaproteobacteria44.9452144834359385296.42%85.20%97.23%96.83%91.22%
Vibrio splendidus LGP32BGammaproteobacteria43.9443643324251332695.83%74.98%98.13%96.98%86.55%
Vibrio vulnificus CMCP6BGammaproteobacteria46.7443445264357367898.26%82.95%96.27%97.26%89.61%
Vibrio vulnificus MO6-24/OBGammaproteobacteria456444254322381094.70%83.48%97.67%96.18%90.58%
Vibrio vulnificus YJ016BGammaproteobacteria46.7502946394530318290.08%63.27%97.65%93.86%80.46%
Vulcanisaeta distributa DSM 14429ACrenarchaeota45249325702491245699.92%98.52%96.93%98.42%97.72%
Vulcanisaeta moutnovskia 768-28ACrenarchaeota232025082307180199.44%77.63%91.99%95.71%84.81%
Waddlia chondrophila WSU 86-1044BChlamydiae/Verrucomicrobia195719181864165495.25%84.52%97.18%96.22%90.85%
Weeksella virosa DSM 16922BBacteroidetes/Chlorobi204521182040199499.76%97.51%96.32%98.04%96.91%
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBGammaproteobacteria22.560764660656299.84%92.59%93.81%96.82%93.20%
Wolbachia endosymbiont of Culex quinquefasciatus PelBAlphaproteobacteria34.2130814141236110894.50%84.71%87.41%90.95%86.06%
Wolbachia endosymbiont of Drosophila melanogasterBAlphaproteobacteria35.211951277106490689.04%75.82%83.32%86.18%79.57%
Wolbachia endosymbiont strain TRS of Brugia malayiBAlphaproteobacteria34.2804114079168298.38%84.83%69.39%83.88%77.11%
Wolbachia sp. wRiBAlphaproteobacteria35.2113014021106101397.88%89.65%78.89%88.38%84.27%
Xanthobacter autotrophicus Py2BAlphaproteobacteria67.3503551774935420498.01%83.50%95.33%96.67%89.41%
Xanthomonas axonopodis pv. citri str. 306BGammaproteobacteria64.7442944774254288396.05%65.09%95.02%95.53%80.06%
Xanthomonas campestris pv. campestris str. 8004BGammaproteobacteria65.0427343504169285097.57%66.70%95.84%96.70%81.27%
Xanthomonas campestris pv. campestris str. ATCC 33913BGammaproteobacteria65.1418142924107280098.23%66.97%95.69%96.96%81.33%
Xanthomonas campestris pv. campestris str. B100BGammaproteobacteria65.0451343164241320693.97%71.04%98.26%96.12%84.65%
Xanthomonas campestris pv. vesicatoria str. 85-10BGammaproteobacteria64.6472646904523367295.70%77.70%96.44%96.07%87.07%
Xanthomonas oryzae pv. oryzae KACC10331BGammaproteobacteria63.7453948314183208792.16%45.98%86.59%89.37%66.28%
Xanthomonas oryzae pv. oryzae MAFF 311018BGammaproteobacteria63.7437247434237318496.91%72.83%89.33%93.12%81.08%
Xanthomonas oryzae pv. oryzae PXO99ABGammaproteobacteria63.6498849844441261989.03%52.51%89.11%89.07%70.81%
Xenorhabdus bovienii SS-2004BGammaproteobacteria45.0436337953738327985.67%75.15%98.50%92.09%86.83%
Xenorhabdus nematophila ATCC 19061BGammaproteobacteria46.0477041444063355085.18%74.42%98.05%91.61%86.23%
Xylanimonas cellulosilytica DSM 15894BActinobacteria72.5344334663429325899.59%94.63%98.93%99.26%96.78%
Xylella fastidiosa 9a5cBGammaproteobacteria52.6283126632313150481.70%53.13%86.86%84.28%69.99%
Xylella fastidiosa M12BGammaproteobacteria51.9210423651934159991.92%76.00%81.78%86.85%78.89%
Xylella fastidiosa M23BGammaproteobacteria51.7220124762140187997.23%85.37%86.43%91.83%85.90%
Xylella fastidiosa Temecula1BGammaproteobacteria51.8203624271957134796.12%66.16%80.63%88.38%73.40%
Xylella fastidiosa subsp. fastidiosa GB514BGammaproteobacteria221624582020164191.16%74.05%82.18%86.67%78.12%
Yersinia enterocolitica subsp. enterocolitica 8081BGammaproteobacteria47.2411042534009328897.54%80.00%94.26%95.90%87.13%
Yersinia pestis AngolaBGammaproteobacteria47.6404742853718319591.87%78.95%86.77%89.32%82.86%
Yersinia pestis AntiquaBGammaproteobacteria47.7436643664183373895.81%85.62%95.81%95.81%90.71%
Yersinia pestis CO92BGammaproteobacteria47.6423042983969331093.83%78.25%92.35%93.09%85.30%
Yersinia pestis D106004BGammaproteobacteria47.6378443623766320599.52%84.70%86.34%92.93%85.52%
Yersinia pestis D182038BGammaproteobacteria47.6378844063773318699.60%84.11%85.63%92.62%84.87%
Yersinia pestis KIM 10BGammaproteobacteria47.7420741553837257391.21%61.16%92.35%91.78%76.75%
Yersinia pestis Nepal516BGammaproteobacteria47.6409641193948353696.39%86.33%95.85%96.12%91.09%
Yersinia pestis Pestoides FBGammaproteobacteria47.7407142273927353496.46%86.81%92.90%94.68%89.86%
Yersinia pestis Z176003BGammaproteobacteria47.7369342363676314499.54%85.13%86.78%93.16%85.96%
Yersinia pestis biovar Medievalis str. Harbin 35BGammaproteobacteria47.6443642603890338887.69%76.38%91.31%89.50%83.84%
Yersinia pestis biovar Microtus str. 91001BGammaproteobacteria47.7415042563907271094.14%65.30%91.80%92.97%78.55%
Yersinia pseudotuberculosis IP 31758BGammaproteobacteria47.2432542704010360292.72%83.28%93.91%93.31%88.60%
Yersinia pseudotuberculosis IP 32953BGammaproteobacteria47.6411041963993354897.15%86.33%95.16%96.16%90.74%
Yersinia pseudotuberculosis PB1/+BGammaproteobacteria47.5423941144067394095.94%92.95%98.86%97.40%95.90%
Yersinia pseudotuberculosis YPIIIBGammaproteobacteria47.5419440824038392096.28%93.47%98.92%97.60%96.19%
Zunongwangia profunda SM-A87BBacteroidetes/Chlorobi35.8465344904375343094.03%73.72%97.44%95.73%85.58%
Zymomonas mobilis subsp. mobilis NCIMB 11163BAlphaproteobacteria46.6188419161860178298.73%94.59%97.08%97.90%95.83%
Zymomonas mobilis subsp. mobilis ZM4BAlphaproteobacteria46.3173717531721163799.08%94.24%98.17%98.63%96.21%
butyrate-producing bacterium SM4/1BFirmicutes168529051429123084.81%73.00%49.19%67.00%61.09%
butyrate-producing bacterium SS3/4BFirmicutes299733322822261494.16%87.22%84.69%89.43%85.96%
butyrate-producing bacterium SSC/2BFirmicutes277230782704255497.55%92.14%87.85%92.70%89.99%
cyanobacterium UCYN-ABCyanobacteria31.1119811961177108898.25%90.82%98.41%98.33%94.61%
marine bacterium HP15BGammaproteobacteria438243544177310195.32%70.77%95.93%95.63%83.35%
uncultured Termite group 1 bacterium phylotype Rs-D17BOther Bacteria35.2776115477069899.23%89.95%66.72%82.98%78.34%
uncultured methanogenic archaeon RC-IAEuryarchaeota54.6308531172936216795.17%70.24%94.19%94.68%82.22%